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The map label for this gene is omp16 [H]

Identifier: 116249010

GI number: 116249010

Start: 366566

End: 367120

Strand: Direct

Name: omp16 [H]

Synonym: pRL120341

Alternate gene names: 116249010

Gene position: 366566-367120 (Clockwise)

Preceding gene: 116249009

Following gene: 116249012

Centisome position: 42.13

GC content: 64.5

Gene sequence:

>555_bases
ATGAGGAATATCACCCTGATGTTTGCTCCGACCGGATATACGAGGCGCCTTGCTGTCGCGGCCATGCTCCTGGCGCTCAC
TGCCTGCACCACCACCAAGGTCGCGTCCCTGGAAGAGCCTGCTGCGGCGCCGATGACCGGCCAGACCAACGATCCGGCGC
CCGGCTTCGAAACCGTCGCGGCTGGCAGCGAAGAGGATTTCATCCTCAATGTCGGCCGACGGATCTACTTCGCGCAGGAT
TCGGCCACGCTCGATTCCGTCGCCATGGCAACGTTGGATAACCAGGCGGCCTGGCTCAGCAAGAACCCGACTTGGCTGCT
CAAGCTGCAGGGATTTGCCGACGATTCCGGCTCCGCATCCAGCATGGAGACGCTGTCGCAGAAGCGCGCCGATGCGGCGA
TGGCCTATCTCGCCTCGAAGGGCGTGGAGGCCAGGCGCATGTGGGCCAAGGGTTACGGCAACGACCGCGAGGTCCGCGAC
TGCACGGAGCGCTCCTGCAAGGTGCAGAACCGGCGCGTCGTCTCCAATCTCCGCACCCAGCCGGACGCAGTCTGA

Upstream 100 bases:

>100_bases
TTTACCAGCGTTGCCCGATCGGCACCGCTGTGCAGGTTCTGCCGCATATTGCCGACCAGGCTGAAAGTGCCGCGCAGGTC
AGCCAAACAACTCCGGTCGA

Downstream 100 bases:

>100_bases
GTTGGGATTGCCCGCGCCTCTTTTCAGCGCCGTCGGCCATGAAAATCCACGCGTGTGCGTCATGACGATGTCGCGCGGAA
CCGCAGCGAAGACGAAACCA

Product: putative outer membrane protein

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MRNITLMFAPTGYTRRLAVAAMLLALTACTTTKVASLEEPAAAPMTGQTNDPAPGFETVAAGSEEDFILNVGRRIYFAQD
SATLDSVAMATLDNQAAWLSKNPTWLLKLQGFADDSGSASSMETLSQKRADAAMAYLASKGVEARRMWAKGYGNDREVRD
CTERSCKVQNRRVVSNLRTQPDAV

Sequences:

>Translated_184_residues
MRNITLMFAPTGYTRRLAVAAMLLALTACTTTKVASLEEPAAAPMTGQTNDPAPGFETVAAGSEEDFILNVGRRIYFAQD
SATLDSVAMATLDNQAAWLSKNPTWLLKLQGFADDSGSASSMETLSQKRADAAMAYLASKGVEARRMWAKGYGNDREVRD
CTERSCKVQNRRVVSNLRTQPDAV
>Mature_184_residues
MRNITLMFAPTGYTRRLAVAAMLLALTACTTTKVASLEEPAAAPMTGQTNDPAPGFETVAAGSEEDFILNVGRRIYFAQD
SATLDSVAMATLDNQAAWLSKNPTWLLKLQGFADDSGSASSMETLSQKRADAAMAYLASKGVEARRMWAKGYGNDREVRD
CTERSCKVQNRRVVSNLRTQPDAV

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19948; Mature: 19948

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNITLMFAPTGYTRRLAVAAMLLALTACTTTKVASLEEPAAAPMTGQTNDPAPGFETVA
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
AGSEEDFILNVGRRIYFAQDSATLDSVAMATLDNQAAWLSKNPTWLLKLQGFADDSGSAS
CCCCCCEEEECCCEEEEECCCCCHHHHHHHHHCCCCEEECCCCEEEEEEECCCCCCCCHH
SMETLSQKRADAAMAYLASKGVEARRMWAKGYGNDREVRDCTERSCKVQNRRVVSNLRTQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDAV
CCCC
>Mature Secondary Structure
MRNITLMFAPTGYTRRLAVAAMLLALTACTTTKVASLEEPAAAPMTGQTNDPAPGFETVA
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
AGSEEDFILNVGRRIYFAQDSATLDSVAMATLDNQAAWLSKNPTWLLKLQGFADDSGSAS
CCCCCCEEEECCCEEEEECCCCCHHHHHHHHHCCCCEEECCCCEEEEEEECCCCCCCCHH
SMETLSQKRADAAMAYLASKGVEARRMWAKGYGNDREVRDCTERSCKVQNRRVVSNLRTQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDAV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]