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The map label for this gene is pvdS

Identifier: 116248988

GI number: 116248988

Start: 342082

End: 342741

Strand: Reverse

Name: pvdS

Synonym: pRL120319

Alternate gene names: NA

Gene position: 342741-342082 (Counterclockwise)

Preceding gene: 116248990

Following gene: 116248984

Centisome position: 39.39

GC content: 57.12

Gene sequence:

>660_bases
ATGCAAGCATTGCATCGTGATGTGAACGGAAATGCCGTGGTCAACGCCATGATCGAAAACAAGGACAAGCTCCTTAAAAC
GATTGAAAGCGTTGTCAAATCAAAGTCATATTCCGAGGATATCTTTCAAGATGGAGTCATTAAAGCCTATGGGGTCAAGA
CCGACGACATTCGTTGCCCGATCGGCTACGCCTTCCGGATGGTCTACAATCTCGCACTCGATGAGAGCCGCCGGCGACGC
CAGAAGATGAACAACCATAGGTCGATAGACCAGATTCAGGAGATCACGGCTCCCATCCCCACCGTGCTCGACCAGCTCGT
CGCTGCCGAGACCCTGCGCAATGTGCTTGCCTCGCTCGAGGCGCTGCCGAAGCGAACCAACGATGCCTTCATTCGCCATC
GCCTCAACGGCGTGCCGCAGAAGGATATTGCAGCCGAACTCGGCGTCTCAAGGACCCTCGTCAACTTCATGATCAAGGCG
GCAGAGGAACATTGCCATCTGGCGATCGCCGAACCTGCTTCCCGCCCCGACCATGCGCACCCGCAGGAGCCTACCGTTTC
GCTGCGTGCAGCGCCTGCTGCAAATCGCTCCACAGCAGTTCCGGCTCTTCCAGGCCAACGGCGAAACGAACCGTCTGCTC
GCTCACGCCGAACCGGATGA

Upstream 100 bases:

>100_bases
GCAATCAAATCGTGTACTTCAGCTCAAAAAAGGAGCCCGAGACCGAACCGGCCAGCAACGACAGAGCCTGATTTTCCATT
TGTAAAAAGGGTACAGGACA

Downstream 100 bases:

>100_bases
AGGAGGTCATCCGGTCGGGGATCTGCAGCGCGACCTTGGCGGGGACCACCAGCGTTTCGGGTCCCCCCCAGCTGACACCG
AGACGGATGTCGCGAAGGCT

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: Extracytoplasmic-Function Sigma-70 Factor PvdS; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; RNA Polymerase Sigma-70 Family Protein; Ferric Regulator Sigma-24 Subunit; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MQALHRDVNGNAVVNAMIENKDKLLKTIESVVKSKSYSEDIFQDGVIKAYGVKTDDIRCPIGYAFRMVYNLALDESRRRR
QKMNNHRSIDQIQEITAPIPTVLDQLVAAETLRNVLASLEALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKA
AEEHCHLAIAEPASRPDHAHPQEPTVSLRAAPAANRSTAVPALPGQRRNEPSARSRRTG

Sequences:

>Translated_219_residues
MQALHRDVNGNAVVNAMIENKDKLLKTIESVVKSKSYSEDIFQDGVIKAYGVKTDDIRCPIGYAFRMVYNLALDESRRRR
QKMNNHRSIDQIQEITAPIPTVLDQLVAAETLRNVLASLEALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKA
AEEHCHLAIAEPASRPDHAHPQEPTVSLRAAPAANRSTAVPALPGQRRNEPSARSRRTG
>Mature_219_residues
MQALHRDVNGNAVVNAMIENKDKLLKTIESVVKSKSYSEDIFQDGVIKAYGVKTDDIRCPIGYAFRMVYNLALDESRRRR
QKMNNHRSIDQIQEITAPIPTVLDQLVAAETLRNVLASLEALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKA
AEEHCHLAIAEPASRPDHAHPQEPTVSLRAAPAANRSTAVPALPGQRRNEPSARSRRTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24343; Mature: 24343

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALHRDVNGNAVVNAMIENKDKLLKTIESVVKSKSYSEDIFQDGVIKAYGVKTDDIRCP
CCCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCCCC
IGYAFRMVYNLALDESRRRRQKMNNHRSIDQIQEITAPIPTVLDQLVAAETLRNVLASLE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKAAEEHCHLAIAEPASRPDHAH
HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCC
PQEPTVSLRAAPAANRSTAVPALPGQRRNEPSARSRRTG
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQALHRDVNGNAVVNAMIENKDKLLKTIESVVKSKSYSEDIFQDGVIKAYGVKTDDIRCP
CCCHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCCCC
IGYAFRMVYNLALDESRRRRQKMNNHRSIDQIQEITAPIPTVLDQLVAAETLRNVLASLE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKAAEEHCHLAIAEPASRPDHAH
HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCC
PQEPTVSLRAAPAANRSTAVPALPGQRRNEPSARSRRTG
CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA