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The map label for this gene is ddpC [H]

Identifier: 116248912

GI number: 116248912

Start: 253667

End: 254593

Strand: Reverse

Name: ddpC [H]

Synonym: pRL120242

Alternate gene names: 116248912

Gene position: 254593-253667 (Counterclockwise)

Preceding gene: 116248913

Following gene: 116248911

Centisome position: 29.26

GC content: 60.73

Gene sequence:

>927_bases
ATGACGATGGCCGACACACAAATCCTCGCCGAGAAAAAACCAAGCGGCCCGATCGGGCGTTGGCTGACGATGTTGTGGGC
GGACAAGCTCGCTTTCTTCGCGGCTCTGTTCCTCTTGATCATTCTGCTCTGTGCGCTGTTTGGGCCGTTCCTGCTGGAGG
CCATCGCCACCAAGCAGAACCTGCGGGGCCGGAACGCGCCGCCGTTCGATATCACCCGCGGAACGCTTTATGTTCTCGGC
GCGGATGCGCTGGGCAGGCCGCTTCTTGCCCGCGTCATCGTGGCAGCGCAAAATACCATCCTGGTTGCCGCGGCAGCCGT
GCTCGCATCATCCGTCGTCGGTACGGCGCTCGGTCTGGTGGCGGGTTACAGCCGCTCTTCTGCTGCTCAATGGATCATGC
GCCTCGGCGACGTCATCATGTCCTTTCCGTCGCTGCTTCTGGCGGTGATCGTGCTCTACATGCTCGAGCCCTCGGTCACC
AATATCGTCCTCGTGTTGGCGATCACCCGCATTCCCATCTATCTGCGCACCACGCGCGCCGAAGTGCTGGAAGTGCGCGA
GCGGATGTTCGTGCAGGCGGCGAAGGTCATGGGAGCATCGTATTGGCGCATTGTCTTCCATCACATCCTGCCGGTGATCT
TCCCCACGCTGGTGACCATCGCGACGCTCGATTTCGCCTTCGTCATGCTGGCGGAATCCTCGCTGTCGTTCCTTGGGATC
GGCATTCAGGCGCCGGAGATCACCTGGGGTCTCATGGTTGCACAAGGACGACCCTATCTCACCAATGCCTGGTGGCTTTC
CTTCTGGCCGGGCCTTGCAATCATTCTGACGACGCTGTCGCTGAACCTTCTGTCGAATTGGCTGCGCATCGCGCTCGATC
CGACGCAACGCTGGCGCCTTGAAATGAGGGGCAGGAAAAATGGCTGA

Upstream 100 bases:

>100_bases
GCTGGCCGTCATCATGGTCTCGGCACTGGCGATCTTCATCATGAACCTGTTGATCGACATCGCCTATGCGCTGCTCGATC
CGCGCATCCGGTATTGAGCG

Downstream 100 bases:

>100_bases
ACATCTTTTGGAAGTGCGCGACCTCTCGGTCGAGTTCCACACCGCCAGCGGGACCGTCAAGGCGGTGCAGGATGTCAGCT
GGCATCTCGATCGCGGCGAG

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MTMADTQILAEKKPSGPIGRWLTMLWADKLAFFAALFLLIILLCALFGPFLLEAIATKQNLRGRNAPPFDITRGTLYVLG
ADALGRPLLARVIVAAQNTILVAAAAVLASSVVGTALGLVAGYSRSSAAQWIMRLGDVIMSFPSLLLAVIVLYMLEPSVT
NIVLVLAITRIPIYLRTTRAEVLEVRERMFVQAAKVMGASYWRIVFHHILPVIFPTLVTIATLDFAFVMLAESSLSFLGI
GIQAPEITWGLMVAQGRPYLTNAWWLSFWPGLAIILTTLSLNLLSNWLRIALDPTQRWRLEMRGRKNG

Sequences:

>Translated_308_residues
MTMADTQILAEKKPSGPIGRWLTMLWADKLAFFAALFLLIILLCALFGPFLLEAIATKQNLRGRNAPPFDITRGTLYVLG
ADALGRPLLARVIVAAQNTILVAAAAVLASSVVGTALGLVAGYSRSSAAQWIMRLGDVIMSFPSLLLAVIVLYMLEPSVT
NIVLVLAITRIPIYLRTTRAEVLEVRERMFVQAAKVMGASYWRIVFHHILPVIFPTLVTIATLDFAFVMLAESSLSFLGI
GIQAPEITWGLMVAQGRPYLTNAWWLSFWPGLAIILTTLSLNLLSNWLRIALDPTQRWRLEMRGRKNG
>Mature_307_residues
TMADTQILAEKKPSGPIGRWLTMLWADKLAFFAALFLLIILLCALFGPFLLEAIATKQNLRGRNAPPFDITRGTLYVLGA
DALGRPLLARVIVAAQNTILVAAAAVLASSVVGTALGLVAGYSRSSAAQWIMRLGDVIMSFPSLLLAVIVLYMLEPSVTN
IVLVLAITRIPIYLRTTRAEVLEVRERMFVQAAKVMGASYWRIVFHHILPVIFPTLVTIATLDFAFVMLAESSLSFLGIG
IQAPEITWGLMVAQGRPYLTNAWWLSFWPGLAIILTTLSLNLLSNWLRIALDPTQRWRLEMRGRKNG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=271, Percent_Identity=37.2693726937269, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787054, Length=272, Percent_Identity=34.5588235294118, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1789964, Length=294, Percent_Identity=33.6734693877551, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789889, Length=216, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787549, Length=291, Percent_Identity=28.1786941580756, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787498, Length=263, Percent_Identity=30.0380228136882, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=29.646017699115, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33963; Mature: 33832

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMADTQILAEKKPSGPIGRWLTMLWADKLAFFAALFLLIILLCALFGPFLLEAIATKQN
CCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGRNAPPFDITRGTLYVLGADALGRPLLARVIVAAQNTILVAAAAVLASSVVGTALGLV
CCCCCCCCCCCCCCEEEEEECHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AGYSRSSAAQWIMRLGDVIMSFPSLLLAVIVLYMLEPSVTNIVLVLAITRIPIYLRTTRA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEHHHH
EVLEVRERMFVQAAKVMGASYWRIVFHHILPVIFPTLVTIATLDFAFVMLAESSLSFLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEE
GIQAPEITWGLMVAQGRPYLTNAWWLSFWPGLAIILTTLSLNLLSNWLRIALDPTQRWRL
CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EMRGRKNG
HCCCCCCC
>Mature Secondary Structure 
TMADTQILAEKKPSGPIGRWLTMLWADKLAFFAALFLLIILLCALFGPFLLEAIATKQN
CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGRNAPPFDITRGTLYVLGADALGRPLLARVIVAAQNTILVAAAAVLASSVVGTALGLV
CCCCCCCCCCCCCCEEEEEECHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AGYSRSSAAQWIMRLGDVIMSFPSLLLAVIVLYMLEPSVTNIVLVLAITRIPIYLRTTRA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEHHHH
EVLEVRERMFVQAAKVMGASYWRIVFHHILPVIFPTLVTIATLDFAFVMLAESSLSFLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEE
GIQAPEITWGLMVAQGRPYLTNAWWLSFWPGLAIILTTLSLNLLSNWLRIALDPTQRWRL
CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EMRGRKNG
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]