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The map label for this gene is ycjN [C]

Identifier: 116248895

GI number: 116248895

Start: 231965

End: 233269

Strand: Reverse

Name: ycjN [C]

Synonym: pRL120225

Alternate gene names: 116248895

Gene position: 233269-231965 (Counterclockwise)

Preceding gene: 116248896

Following gene: 116248894

Centisome position: 26.81

GC content: 61.99

Gene sequence:

>1305_bases
ATGAGGTTTAAGAGACGTGACTTTCTTGCCGCCTCGGCTGCCGTTGCCGGCGCCGCCGGCCTCGGCATCCGGCCGACCTT
CGCCCAGGCCGAACCGACCTATACACCGGAAAGCGGCGCCAGCCTGCGGCTACTGCGCTGGACACCCTTCGTCAAGGGCG
ACGAGGAGGCCTGGATTGCCAACACCAAGAAATTCACCGAAGCGACCGGCGTAGAGGTGCGCATCGACAAGGAAAGCTGG
GAAGATATCCGCCCAAAGGCTGCCGTCGCGGCCAATGTCGGTTCCGGCCCCGACCTCATCATGTGCTGGTTCGACGACGC
TCACCAGTATCCCGACAAGCTGGTCGACCTGACCGAGCTCGCCAACTATCTCGGCAACAAATATGGCGGCTGGTATGACG
GCGTGAAGGGTTATGCCGCGCGCGGCGACACGTTCATCGCCATGCCGCTGGCGGCAATCGGCAATGCGGTGGTCTATCGC
GACACTCACGTGAAGGCTGCCGGCTTCAGCGAGTTCCCGAAAGACACGGCAGGCTTCCTGGAGCTTTGCAAGGCGATGAA
AGCCAAGGGCACGCCGGCAGGCTTCCCGCACGGCAAGGCCGTCGGCGACGGCAACAACTACGCCCATTGGCTGCTGTGGA
GCCACGGCGGCAAGATGGTCGACGAAGGCGGCAAGGTGACGATCAACAGCCCGGAAACGCTGGCGTCGATCAACTATGCC
AAGGAGCTCTATGCGACCTTCATTCCAGGCACGGAAAGCTGGCAGGACGTCAACAACAACCGCGCCTTCCTCGCCGGCCA
GGTTTCGCTGATCGCCAACGGCGTCTCGGTCTATTACACGGCCAAGAACGACCCGAAGCTCGCCGAGATCGCCAAGGACA
TCCGCACGACGAATTTCCCCGTCGGCCCGGTTGGCCAGAGCGTCGAGCTTTTCCAGACGAGCTCCCTGCTTCTCTTCAAG
CATACGAAGTATCCGGAAGCGGCGAAGGCCTACATCAAGTTCATGATGGAAGCCGACCAGATGAATGCCTGGATCCAGGG
CTCCAGCGCCTATTGCTGCCAGCCGCTCAAGGCTTTCGCCCAGAACCCGATCTGGACATCCGATCCGATCCACGCGCCTT
ATGCGCGCGCCTCGGAAAAATTGCGCCCGAACGGCTATGCCGGCCCACTCGGTTATGCCTCGGCAGCGACCATGGCCGAC
TACGTTCTGGTCGACATGTATGCGGCCGCCGTCACCGGCCAGATGTCGCCCGAAGATGCGATGAAGGAAGCTGAACGGCG
GGCAAACCGCTACTATCGCGTCTGA

Upstream 100 bases:

>100_bases
CCGGCAGCACCCCGTTTCAGGGATGCAAGGACCGTCGTTCACCAAGCGGGAGGTGAATGGCGGGGAGTTCGCACCCGCTT
TTTTGAAGAGGAGGAATATC

Downstream 100 bases:

>100_bases
GCCGCGCTTCAAAACAAGCGGTGTGCCGGCCCTCGGCATGCCGCAAAGTCCTCTGGGAGTTCAAGTGCAATCTGGGAGAT
GGCAATGTCGATGGTGAATT

Product: putative substrate binding component of ABC transporter

Products: NA

Alternate protein names: Sugar ABC Transporter Periplasmic Protein; Sugar ABC Transporter

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MRFKRRDFLAASAAVAGAAGLGIRPTFAQAEPTYTPESGASLRLLRWTPFVKGDEEAWIANTKKFTEATGVEVRIDKESW
EDIRPKAAVAANVGSGPDLIMCWFDDAHQYPDKLVDLTELANYLGNKYGGWYDGVKGYAARGDTFIAMPLAAIGNAVVYR
DTHVKAAGFSEFPKDTAGFLELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDEGGKVTINSPETLASINYA
KELYATFIPGTESWQDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFPVGPVGQSVELFQTSSLLLFK
HTKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFAQNPIWTSDPIHAPYARASEKLRPNGYAGPLGYASAATMAD
YVLVDMYAAAVTGQMSPEDAMKEAERRANRYYRV

Sequences:

>Translated_434_residues
MRFKRRDFLAASAAVAGAAGLGIRPTFAQAEPTYTPESGASLRLLRWTPFVKGDEEAWIANTKKFTEATGVEVRIDKESW
EDIRPKAAVAANVGSGPDLIMCWFDDAHQYPDKLVDLTELANYLGNKYGGWYDGVKGYAARGDTFIAMPLAAIGNAVVYR
DTHVKAAGFSEFPKDTAGFLELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDEGGKVTINSPETLASINYA
KELYATFIPGTESWQDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFPVGPVGQSVELFQTSSLLLFK
HTKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFAQNPIWTSDPIHAPYARASEKLRPNGYAGPLGYASAATMAD
YVLVDMYAAAVTGQMSPEDAMKEAERRANRYYRV
>Mature_434_residues
MRFKRRDFLAASAAVAGAAGLGIRPTFAQAEPTYTPESGASLRLLRWTPFVKGDEEAWIANTKKFTEATGVEVRIDKESW
EDIRPKAAVAANVGSGPDLIMCWFDDAHQYPDKLVDLTELANYLGNKYGGWYDGVKGYAARGDTFIAMPLAAIGNAVVYR
DTHVKAAGFSEFPKDTAGFLELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDEGGKVTINSPETLASINYA
KELYATFIPGTESWQDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFPVGPVGQSVELFQTSSLLLFK
HTKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFAQNPIWTSDPIHAPYARASEKLRPNGYAGPLGYASAATMAD
YVLVDMYAAAVTGQMSPEDAMKEAERRANRYYRV

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Ycjnop. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787569, Length=298, Percent_Identity=22.8187919463087, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47420; Mature: 47420

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKRRDFLAASAAVAGAAGLGIRPTFAQAEPTYTPESGASLRLLRWTPFVKGDEEAWIA
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEC
NTKKFTEATGVEVRIDKESWEDIRPKAAVAANVGSGPDLIMCWFDDAHQYPDKLVDLTEL
CCHHHHHCCCCEEEECCHHHHHCCCCCEEEECCCCCCCEEEEEECCCHHCHHHHHHHHHH
ANYLGNKYGGWYDGVKGYAARGDTFIAMPLAAIGNAVVYRDTHVKAAGFSEFPKDTAGFL
HHHHCCCCCCHHHCCCCCCCCCCEEEEEEHHHHCCEEEEECCCCEECCCCCCCCHHHHHH
ELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDEGGKVTINSPETLASINYA
HHHHHHHCCCCCCCCCCCCEECCCCCEEEEEEECCCCEEECCCCEEEECCCHHHHHHHHH
KELYATFIPGTESWQDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFP
HHHHHHCCCCCCCHHHCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCC
VGPVGQSVELFQTSSLLLFKHTKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFA
CCCCCCCEEEHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHH
QNPIWTSDPIHAPYARASEKLRPNGYAGPLGYASAATMADYVLVDMYAAAVTGQMSPEDA
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
MKEAERRANRYYRV
HHHHHHHHHCCCCC
>Mature Secondary Structure
MRFKRRDFLAASAAVAGAAGLGIRPTFAQAEPTYTPESGASLRLLRWTPFVKGDEEAWIA
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEC
NTKKFTEATGVEVRIDKESWEDIRPKAAVAANVGSGPDLIMCWFDDAHQYPDKLVDLTEL
CCHHHHHCCCCEEEECCHHHHHCCCCCEEEECCCCCCCEEEEEECCCHHCHHHHHHHHHH
ANYLGNKYGGWYDGVKGYAARGDTFIAMPLAAIGNAVVYRDTHVKAAGFSEFPKDTAGFL
HHHHCCCCCCHHHCCCCCCCCCCEEEEEEHHHHCCEEEEECCCCEECCCCCCCCHHHHHH
ELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDEGGKVTINSPETLASINYA
HHHHHHHCCCCCCCCCCCCEECCCCCEEEEEEECCCCEEECCCCEEEECCCHHHHHHHHH
KELYATFIPGTESWQDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFP
HHHHHHCCCCCCCHHHCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCC
VGPVGQSVELFQTSSLLLFKHTKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFA
CCCCCCCEEEHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHH
QNPIWTSDPIHAPYARASEKLRPNGYAGPLGYASAATMADYVLVDMYAAAVTGQMSPEDA
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
MKEAERRANRYYRV
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA