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The map label for this gene is ycbG [H]

Identifier: 116248852

GI number: 116248852

Start: 185994

End: 186749

Strand: Direct

Name: ycbG [H]

Synonym: pRL120181

Alternate gene names: 116248852

Gene position: 185994-186749 (Clockwise)

Preceding gene: 116248848

Following gene: 116248853

Centisome position: 21.38

GC content: 62.57

Gene sequence:

>756_bases
ATGATCCTCAAATACGACGAGGTTGTCCGCACGGGCATCGCCAAACAGGTGGCCGACAATATCCGTTCGGCCATCATGGA
CGGCCGGTTAAAGATCGACGAGCGCCTTCCAACCGAGGAGGATCTCGCCAAGAGTTTCGGCATTTCCCGCCCGACCGTGC
GCGAGGCGCTGAAGCGTCTTGCGGCACAGAATCTCATCCGCTCCAAGCGCGGCCCGGCTGGCGGCAATTTCGTCAAGCGG
CCGGATCCCGAGGGTCTATCGAAGGCCATCACTGGGGCGGCGACGCTTCTAGTCGGCATCGGCGCCTTCGATATCGAAGA
AATCATCACGGCGCGGCTGGAAACCGAAACCGTCTGCTGCCGACTGGCGGCCGCAAACCGCGACGAAAGCCATCTCGCCG
CCATGGAGGCGGAGATCGCAGTCCAGCTCGATCCGACGATCAGCGACGAGGGTTTCTGCGCCTCGGACGTACGTTTTCAC
CGTGCGCTGGTGGAATCGACCGGCAACGGTCCGTTGAAGCTGATGATGTATACCGTGATCGAAGCCTTCATTCCGATCAC
CAACATGATCGTCTTCCGGGTCCGCGAGCGGCACCACGTCGCATCGCTGCATCAGGAGATCATCCATGCCGTGCGCGCCC
GCGACGATGCGAAGGCAACGGACGCGTTGGCGCGGCTTCTCGCCTATGTGCGCGAAAGCTATGCGGCCGTCCTGAACGCC
CGCGCCGGACGCGATGCCGCGCAGGTTTCGGCTTGA

Upstream 100 bases:

>100_bases
TAGTCCCATTCCTCTATTTGTCAAACCTATATTTAAAAAGCAGTAGCCTTTTGAATTCGCCCATGGCATCACTGTTGGCC
AGAGATCGGGAAGGGGCGAA

Downstream 100 bases:

>100_bases
ATCCTTAAGAAATCAAAGACCGGGAGGCACGAAATGACCGAGACCTTCACCGCAATGGTGATCGACACCGTTGACGGCAA
GCCGAAAGGTGCGTTCAGGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MILKYDEVVRTGIAKQVADNIRSAIMDGRLKIDERLPTEEDLAKSFGISRPTVREALKRLAAQNLIRSKRGPAGGNFVKR
PDPEGLSKAITGAATLLVGIGAFDIEEIITARLETETVCCRLAAANRDESHLAAMEAEIAVQLDPTISDEGFCASDVRFH
RALVESTGNGPLKLMMYTVIEAFIPITNMIVFRVRERHHVASLHQEIIHAVRARDDAKATDALARLLAYVRESYAAVLNA
RAGRDAAQVSA

Sequences:

>Translated_251_residues
MILKYDEVVRTGIAKQVADNIRSAIMDGRLKIDERLPTEEDLAKSFGISRPTVREALKRLAAQNLIRSKRGPAGGNFVKR
PDPEGLSKAITGAATLLVGIGAFDIEEIITARLETETVCCRLAAANRDESHLAAMEAEIAVQLDPTISDEGFCASDVRFH
RALVESTGNGPLKLMMYTVIEAFIPITNMIVFRVRERHHVASLHQEIIHAVRARDDAKATDALARLLAYVRESYAAVLNA
RAGRDAAQVSA
>Mature_251_residues
MILKYDEVVRTGIAKQVADNIRSAIMDGRLKIDERLPTEEDLAKSFGISRPTVREALKRLAAQNLIRSKRGPAGGNFVKR
PDPEGLSKAITGAATLLVGIGAFDIEEIITARLETETVCCRLAAANRDESHLAAMEAEIAVQLDPTISDEGFCASDVRFH
RALVESTGNGPLKLMMYTVIEAFIPITNMIVFRVRERHHVASLHQEIIHAVRARDDAKATDALARLLAYVRESYAAVLNA
RAGRDAAQVSA

Specific function: May Be A Regulatory Protein For The Lct Genes. [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790032, Length=229, Percent_Identity=27.0742358078603, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789621, Length=241, Percent_Identity=24.4813278008299, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27443; Mature: 27443

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKYDEVVRTGIAKQVADNIRSAIMDGRLKIDERLPTEEDLAKSFGISRPTVREALKRL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCHHHHHHHHCCCCHHHHHHHHHH
AAQNLIRSKRGPAGGNFVKRPDPEGLSKAITGAATLLVGIGAFDIEEIITARLETETVCC
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RLAAANRDESHLAAMEAEIAVQLDPTISDEGFCASDVRFHRALVESTGNGPLKLMMYTVI
HHHHCCCCHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
EAFIPITNMIVFRVRERHHVASLHQEIIHAVRARDDAKATDALARLLAYVRESYAAVLNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RAGRDAAQVSA
HCCCCHHHCCC
>Mature Secondary Structure
MILKYDEVVRTGIAKQVADNIRSAIMDGRLKIDERLPTEEDLAKSFGISRPTVREALKRL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCHHHHHHHHCCCCHHHHHHHHHH
AAQNLIRSKRGPAGGNFVKRPDPEGLSKAITGAATLLVGIGAFDIEEIITARLETETVCC
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RLAAANRDESHLAAMEAEIAVQLDPTISDEGFCASDVRFHRALVESTGNGPLKLMMYTVI
HHHHCCCCHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
EAFIPITNMIVFRVRERHHVASLHQEIIHAVRARDDAKATDALARLLAYVRESYAAVLNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RAGRDAAQVSA
HCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]