Click here to switch to the map view.

The map label for this gene is yckA [H]

Identifier: 116248756

GI number: 116248756

Start: 79569

End: 80228

Strand: Direct

Name: yckA [H]

Synonym: pRL120080

Alternate gene names: 116248756

Gene position: 79569-80228 (Clockwise)

Preceding gene: 116248755

Following gene: 116248757

Centisome position: 9.15

GC content: 59.85

Gene sequence:

>660_bases
ATGATCGAGTTCACGCTCTGGGACATCCTGCGCAACCTGCTGCTCGCCACCCGCTGGACGATCCTGCTTTCGCTGGTCTC
GTTCATCGGCGGCGGCGTGGTCGGGCTGGGGCTGCTGTTCCTGCGCATCAGCAAGCGCAAGGCATTCAGGACAGTCGCGA
AATATTATATCGAGCTCTTCCAGGGCACGCCGTTGCTGATGCAGCTCTTCATCGCCTTTTTCGGTCTCGGCCTCTTCGGG
ATAGACGTGCCGGCCTGGCTTGCTGCGGGTTTTGCGCTGATCTTGTGGAGCGCTGCCTTCCTCGCCGAAATCTGGCGAGG
CTGCGTCGAAGCGGTCGTGAAGGGTCAGTGGGAAGCCTCCGCCAGCCTCGGCATGGGCCGGTTGCAGCAGATGCGTTATG
TCATCCTCCCGCAGGCACTGAGGGTCGCCATACCGCCGACGGTCGGTTTCTCCGTTCAAATCGTCAAGGGAACGGCGCTG
ACCTCGATCATCGGTTTCGTCGAATTGTCGAAAGCCGGCACGGTCGTCACCAATGCCACTTTCCAGCCCTTCACCGTCTA
CGGGCTCGTCGCCCTCATCTACTTCGCCCTTTGCTGGCCTTTGTCGAAAAGCAGCCAGATCCTGGAAAGGAAGCTCAATG
TCGCTCATCGAAATCACTGA

Upstream 100 bases:

>100_bases
CCTACATCGTCTCGACAGCCATCTATCTTGTGCTGGCGATCCTGCTCCGGCAGCTGCTGGCGGTGGTCGGCGGGTTCATT
TTCCCGAGGAGAGCAGCACG

Downstream 100 bases:

>100_bases
AGTCCGCAAGAGCTTTGGCACCACCGAGGTGCTGAAAGGCATCAATCTCGATGTGGAGGCCGGCGAAGTTATCGCCATTA
TCGGCAAGAGCGGTTCGGGA

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MIEFTLWDILRNLLLATRWTILLSLVSFIGGGVVGLGLLFLRISKRKAFRTVAKYYIELFQGTPLLMQLFIAFFGLGLFG
IDVPAWLAAGFALILWSAAFLAEIWRGCVEAVVKGQWEASASLGMGRLQQMRYVILPQALRVAIPPTVGFSVQIVKGTAL
TSIIGFVELSKAGTVVTNATFQPFTVYGLVALIYFALCWPLSKSSQILERKLNVAHRNH

Sequences:

>Translated_219_residues
MIEFTLWDILRNLLLATRWTILLSLVSFIGGGVVGLGLLFLRISKRKAFRTVAKYYIELFQGTPLLMQLFIAFFGLGLFG
IDVPAWLAAGFALILWSAAFLAEIWRGCVEAVVKGQWEASASLGMGRLQQMRYVILPQALRVAIPPTVGFSVQIVKGTAL
TSIIGFVELSKAGTVVTNATFQPFTVYGLVALIYFALCWPLSKSSQILERKLNVAHRNH
>Mature_219_residues
MIEFTLWDILRNLLLATRWTILLSLVSFIGGGVVGLGLLFLRISKRKAFRTVAKYYIELFQGTPLLMQLFIAFFGLGLFG
IDVPAWLAAGFALILWSAAFLAEIWRGCVEAVVKGQWEASASLGMGRLQQMRYVILPQALRVAIPPTVGFSVQIVKGTAL
TSIIGFVELSKAGTVVTNATFQPFTVYGLVALIYFALCWPLSKSSQILERKLNVAHRNH

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=38.3886255924171, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=33.4928229665072, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1787030, Length=211, Percent_Identity=31.7535545023697, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1788645, Length=197, Percent_Identity=30.4568527918782, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI48994930, Length=137, Percent_Identity=35.7664233576642, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787086, Length=224, Percent_Identity=27.2321428571429, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1786874, Length=188, Percent_Identity=26.063829787234, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=26.8181818181818, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24225; Mature: 24225

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEFTLWDILRNLLLATRWTILLSLVSFIGGGVVGLGLLFLRISKRKAFRTVAKYYIELF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGTPLLMQLFIAFFGLGLFGIDVPAWLAAGFALILWSAAFLAEIWRGCVEAVVKGQWEAS
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ASLGMGRLQQMRYVILPQALRVAIPPTVGFSVQIVKGTALTSIIGFVELSKAGTVVTNAT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEECCC
FQPFTVYGLVALIYFALCWPLSKSSQILERKLNVAHRNH
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEFTLWDILRNLLLATRWTILLSLVSFIGGGVVGLGLLFLRISKRKAFRTVAKYYIELF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGTPLLMQLFIAFFGLGLFGIDVPAWLAAGFALILWSAAFLAEIWRGCVEAVVKGQWEAS
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ASLGMGRLQQMRYVILPQALRVAIPPTVGFSVQIVKGTALTSIIGFVELSKAGTVVTNAT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEECCC
FQPFTVYGLVALIYFALCWPLSKSSQILERKLNVAHRNH
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]