| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is fliI [H]
Identifier: 115353163
GI number: 115353163
Start: 3432769
End: 3434310
Strand: Direct
Name: fliI [H]
Synonym: Bamb_3112
Alternate gene names: 115353163
Gene position: 3432769-3434310 (Clockwise)
Preceding gene: 115353162
Following gene: 115353164
Centisome position: 96.52
GC content: 71.66
Gene sequence:
>1542_bases ATGGTGACGCCCACGCCCGAATCGATCCTGTACGACGGGATGACGCCGCTCGAGCGCGAACTCGCGCTCGCGTCGTTCGG CCCCGACGGCGCGCATGACCCCGCACACGGCGCCGCTCCGCACGCGGCACCCGCTGCGGACGACGCGCCGCGCGCCCCGC ACAATCCGCATCTCGCGCACTGGCGCACGCACCTGAACGGCCTCGCGACGCGCAGCCAGCGCGCGCTGCCGCTGCGGCCG TGCGGGCGCCTCACGCGCGCCGCGGGCCTCGTGCTCGAGGCGATCGGGCTGCGCCTGTCGGTCGGCGCCGAATGCACGAT CGAACTGCCGCCCGGCAGCACGCTGCCGCACGCGGAAGCGGAAGTCGTCGGGTTCTCCGGCGATCGCCTGTTCCTGATGC CGACCACCGACGTCGCCGGCGTGCTGCCCGGCGCACGCGTGTGGCCGCGCGAAAGCGCGCCCGTCGCCGATCCGCTCGCG GGCGCCAAACGGCTGCCGGTCGGCTGGGAGATGCTCGGGCGTGTCGTCGATGCGTCGGGCCGCCCGCTCGATGGCCTCGG CCCGCTCGCGTCGAAGGTCGACGCTTCGCTGTCGGCGCCGTCGATCAATCCGCTCGATCGCGAGCCGATCCACAGCGTGC TCGACGTCGGCGTGCGCGCGATCAACGCGCTGCTCACCGTCGGCCGCGGGCAGCGGATGGGCCTGTTCGCGGGGTCCGGC GTCGGCAAGTCGGTGCTGCTCGGCACGATGGCGCGCTACACCAGCGCGGAAGTGATCGTGATCGGGCTGATCGGCGAACG CGGCCGCGAAGTGAAGGAATTCATCGAACAAATCCTCGGCGAGGACGGGCTCGCGCGCTCGGTCGTCGTCGCGGCGCCGG CCGACGTGTCGCCGCTGCTGCGGATGCAGGGCGCCGCCTACGCGACGTCGCTCGCCGAGTATTTCCGCGATCAGGGCAAG CACGTGCTGCTGCTGATGGATTCGCTGACGCGCTACGCGATGGCGCAGCGCGAGATCGCGCTCGCGATCGGCGAGCCGCC CGCGACCAAGGGCTATCCTCCGTCGGTGTTCGCGAAGCTGCCCGCGCTCGTCGAGCGCACCGGCAACGGGCCCGAAGGCG GCGGCTCGATCACCGCGTTCTACACGGTGCTGACCGAAGGCGACGACCAGCAGGACCCGATTGCCGACTCGGCGCGCGCG ATCCTCGACGGCCACATCGTGCTGTCGCGCGCGCTCGCCGAGGCCGGCCACTATCCGGCGATCGACATCGAGGCGTCGAT CAGCCGCGCGATGACCGCGCTGATCGACGAAACGCATCTCGACCGCGTGCGGCAGTTCAAGCAGATGCTGTCGCGCTACC AGCGCAATCGCGACCTGATCGCGGTCGGCGCGTATGCACCGGGCCGCGACGCGCAGCTCGACCGCGCGATCGCGCTCTAT CCGCGCATCGAATCGTTCCTGCAGCAGGGCTTTCGCGAATGCGCGCCGTTCGCGTCGAGCCTCGCCGGGCTCGATGCGCT GTTCGACGTACACGGAGGCTGA
Upstream 100 bases:
>100_bases AGCGCGGCGGCTGCCGCGCGCACGCCGCGACGGGCGAGGTCGACGCGACGCTGCCCACCCGCTGGCAGCGTGTCGCCGCC GCGATCGGCAAGGTGAGCGC
Downstream 100 bases:
>100_bases TTCCGATGGCACACGGCTTTCCCCTTCAACTGCTGCTCGACCGCGCGCAGGAAGATCTCGACACGGCCACGAAGCAGCTC GGCACCGCGCAGCGCGACCG
Product: flagellar protein export ATPase FliI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 513; Mature: 513
Protein sequence:
>513_residues MVTPTPESILYDGMTPLERELALASFGPDGAHDPAHGAAPHAAPAADDAPRAPHNPHLAHWRTHLNGLATRSQRALPLRP CGRLTRAAGLVLEAIGLRLSVGAECTIELPPGSTLPHAEAEVVGFSGDRLFLMPTTDVAGVLPGARVWPRESAPVADPLA GAKRLPVGWEMLGRVVDASGRPLDGLGPLASKVDASLSAPSINPLDREPIHSVLDVGVRAINALLTVGRGQRMGLFAGSG VGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLARSVVVAAPADVSPLLRMQGAAYATSLAEYFRDQGK HVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARA ILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAIALY PRIESFLQQGFRECAPFASSLAGLDALFDVHGG
Sequences:
>Translated_513_residues MVTPTPESILYDGMTPLERELALASFGPDGAHDPAHGAAPHAAPAADDAPRAPHNPHLAHWRTHLNGLATRSQRALPLRP CGRLTRAAGLVLEAIGLRLSVGAECTIELPPGSTLPHAEAEVVGFSGDRLFLMPTTDVAGVLPGARVWPRESAPVADPLA GAKRLPVGWEMLGRVVDASGRPLDGLGPLASKVDASLSAPSINPLDREPIHSVLDVGVRAINALLTVGRGQRMGLFAGSG VGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLARSVVVAAPADVSPLLRMQGAAYATSLAEYFRDQGK HVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARA ILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAIALY PRIESFLQQGFRECAPFASSLAGLDALFDVHGG >Mature_513_residues MVTPTPESILYDGMTPLERELALASFGPDGAHDPAHGAAPHAAPAADDAPRAPHNPHLAHWRTHLNGLATRSQRALPLRP CGRLTRAAGLVLEAIGLRLSVGAECTIELPPGSTLPHAEAEVVGFSGDRLFLMPTTDVAGVLPGARVWPRESAPVADPLA GAKRLPVGWEMLGRVVDASGRPLDGLGPLASKVDASLSAPSINPLDREPIHSVLDVGVRAINALLTVGRGQRMGLFAGSG VGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLARSVVVAAPADVSPLLRMQGAAYATSLAEYFRDQGK HVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARA ILDGHIVLSRALAEAGHYPAIDIEASISRAMTALIDETHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAIALY PRIESFLQQGFRECAPFASSLAGLDALFDVHGG
Specific function: Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. May be involved in a specialized protein export pathway that proceeds without signal peptide cleavage [
COG id: COG1157
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway ATPase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATPase alpha/beta chains family [H]
Homologues:
Organism=Homo sapiens, GI32189394, Length=354, Percent_Identity=30.225988700565, Blast_Score=154, Evalue=1e-37, Organism=Homo sapiens, GI50345984, Length=350, Percent_Identity=32, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI4757810, Length=350, Percent_Identity=32, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI19913424, Length=334, Percent_Identity=27.8443113772455, Blast_Score=116, Evalue=4e-26, Organism=Homo sapiens, GI19913428, Length=319, Percent_Identity=27.5862068965517, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI19913426, Length=355, Percent_Identity=27.0422535211268, Blast_Score=110, Evalue=3e-24, Organism=Escherichia coli, GI1788251, Length=431, Percent_Identity=72.8538283062645, Blast_Score=585, Evalue=1e-168, Organism=Escherichia coli, GI1790170, Length=412, Percent_Identity=29.8543689320388, Blast_Score=157, Evalue=1e-39, Organism=Escherichia coli, GI1790172, Length=368, Percent_Identity=26.3586956521739, Blast_Score=119, Evalue=7e-28, Organism=Escherichia coli, GI1790217, Length=244, Percent_Identity=27.4590163934426, Blast_Score=66, Evalue=7e-12, Organism=Caenorhabditis elegans, GI25144756, Length=359, Percent_Identity=30.3621169916435, Blast_Score=150, Evalue=2e-36, Organism=Caenorhabditis elegans, GI71988080, Length=342, Percent_Identity=30.7017543859649, Blast_Score=137, Evalue=2e-32, Organism=Caenorhabditis elegans, GI71988063, Length=342, Percent_Identity=30.7017543859649, Blast_Score=137, Evalue=2e-32, Organism=Caenorhabditis elegans, GI71988074, Length=327, Percent_Identity=29.0519877675841, Blast_Score=120, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17510931, Length=317, Percent_Identity=28.0757097791798, Blast_Score=116, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17570191, Length=359, Percent_Identity=27.8551532033426, Blast_Score=115, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17565854, Length=323, Percent_Identity=28.4829721362229, Blast_Score=110, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6319370, Length=349, Percent_Identity=31.8051575931232, Blast_Score=152, Evalue=1e-37, Organism=Saccharomyces cerevisiae, GI6322581, Length=347, Percent_Identity=30.2593659942363, Blast_Score=148, Evalue=2e-36, Organism=Saccharomyces cerevisiae, GI6319603, Length=360, Percent_Identity=29.1666666666667, Blast_Score=123, Evalue=6e-29, Organism=Saccharomyces cerevisiae, GI6320016, Length=283, Percent_Identity=27.208480565371, Blast_Score=98, Evalue=3e-21, Organism=Drosophila melanogaster, GI24638766, Length=347, Percent_Identity=30.835734870317, Blast_Score=154, Evalue=1e-37, Organism=Drosophila melanogaster, GI24658560, Length=342, Percent_Identity=30.7017543859649, Blast_Score=139, Evalue=4e-33, Organism=Drosophila melanogaster, GI28574560, Length=350, Percent_Identity=30, Blast_Score=137, Evalue=2e-32, Organism=Drosophila melanogaster, GI281361666, Length=320, Percent_Identity=27.8125, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24646341, Length=320, Percent_Identity=27.8125, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI17136796, Length=320, Percent_Identity=27.8125, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI20129479, Length=332, Percent_Identity=26.5060240963855, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI24583988, Length=332, Percent_Identity=26.2048192771084, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI24583986, Length=332, Percent_Identity=26.2048192771084, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI24583984, Length=332, Percent_Identity=26.2048192771084, Blast_Score=111, Evalue=1e-24, Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=27.1604938271605, Blast_Score=109, Evalue=4e-24,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020003 - InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR005714 - InterPro: IPR020005 [H]
Pfam domain/function: PF00006 ATP-synt_ab [H]
EC number: =3.6.3.14 [H]
Molecular weight: Translated: 54305; Mature: 54305
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS00152 ATPASE_ALPHA_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTPTPESILYDGMTPLERELALASFGPDGAHDPAHGAAPHAAPAADDAPRAPHNPHLAH CCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH WRTHLNGLATRSQRALPLRPCGRLTRAAGLVLEAIGLRLSVGAECTIELPPGSTLPHAEA HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCEEEEECCCCCCCCCCCC EVVGFSGDRLFLMPTTDVAGVLPGARVWPRESAPVADPLAGAKRLPVGWEMLGRVVDASG EEEECCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHCCCC RPLDGLGPLASKVDASLSAPSINPLDREPIHSVLDVGVRAINALLTVGRGQRMGLFAGSG CCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC VGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLARSVVVAAPADVSPLL CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHH RMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL HHCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHH PALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRALAEAGHYPA HHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE IDIEASISRAMTALIDETHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAIALY EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH PRIESFLQQGFRECAPFASSLAGLDALFDVHGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MVTPTPESILYDGMTPLERELALASFGPDGAHDPAHGAAPHAAPAADDAPRAPHNPHLAH CCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH WRTHLNGLATRSQRALPLRPCGRLTRAAGLVLEAIGLRLSVGAECTIELPPGSTLPHAEA HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCEEEEECCCCCCCCCCCC EVVGFSGDRLFLMPTTDVAGVLPGARVWPRESAPVADPLAGAKRLPVGWEMLGRVVDASG EEEECCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHCCCC RPLDGLGPLASKVDASLSAPSINPLDREPIHSVLDVGVRAINALLTVGRGQRMGLFAGSG CCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC VGKSVLLGTMARYTSAEVIVIGLIGERGREVKEFIEQILGEDGLARSVVVAAPADVSPLL CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHH RMQGAAYATSLAEYFRDQGKHVLLLMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKL HHCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHH PALVERTGNGPEGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRALAEAGHYPA HHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE IDIEASISRAMTALIDETHLDRVRQFKQMLSRYQRNRDLIAVGAYAPGRDAQLDRAIALY EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH PRIESFLQQGFRECAPFASSLAGLDALFDVHGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]