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The map label for this gene is ydiF [H]

Identifier: 115353024

GI number: 115353024

Start: 3279167

End: 3280807

Strand: Direct

Name: ydiF [H]

Synonym: Bamb_2973

Alternate gene names: 115353024

Gene position: 3279167-3280807 (Clockwise)

Preceding gene: 115353023

Following gene: 115353026

Centisome position: 92.2

GC content: 72.58

Gene sequence:

>1641_bases
ATGGCTGCTGCCACGCCCATCGGCGCGCTCGTCGCGCTTCATCACGTTTCCTTCCGCTTCGACGACGGCGTCACGCTGTT
CGATTCGCTCGACCTTTCCATCGATCGCACGCCGACGGGCATCGTCGGCCGCAACGGCGTCGGCAAGAGCCTGCTCGCGC
AACTGATCGCGGGCCGGCGCACGCCCAGCGCGGGCACGATCGACCGGCACACGCCCGTCGTGTACGTCGCGCAGCAGCAC
GACGACGCGCCGGCCGGCACGCGCACCGTAGCCGAAATCGCCGCGCTCGATGCGCCGCTCGCGGCCCTGGCGCGCCTCGC
GGACGGCCGCGCGCACGCGCTCGACTTCGACCTGATCGGCGATCGCTGGGACCTCGTCGAGCGGCTGCGCGCGGCGCTCG
ACGCGGCCGGGCTGCACGACGTGCGCGCCGACACGCCGGCGCACGCGCTGAGCGGCGGCCAGTTGGCGCGCGTCGCGCTG
ATCGGCGCGTTGCTGTCGGACGCCGGGCTGCTGGTGCTCGACGAACCGACCAACCATCTCGATGCAGCGGGCCGCGCGTG
GCTGCGCGCGGCGCTCGACGGCTGGCGCGGCGGCGTCGTGATCGTCAGCCATGACCGCGCGTTGCTCGCGCACGTGCAGC
GCATCGTCGAACTGACGCCGCACGGTGTGCGCGCGTATGGCGGCAACTACGCGCTGTACCGCGCCCAGCGCGACGCGGAA
CAGGATGCCGCGCAGGCCGCGCTCGAGCATGCGCATGCAGAGCGCGGGCGCGTGAGACGCCGGCTCGAACAGGAACACGA
CACGATCCAGCGCCACGCGGCCGGCGCGCTGCGCGACGCGAAGGCGGCCAACCTGTCGTCGATGGCACGTCAGCGTCGCA
AGGGCGCGGCGCGCAACATCATGGGGCAGGTCCGGCGTCATCAGAACGACTTCAAGGAGACGCTCGACGAGCGCGTGCAG
GAGGCGGCCGCACGCGTCGAAGCCGACGCGCCGGTGCTCGTGTCGTTGCCGGGCACCGAGGTCAGCGCCCGCCGCCAGCT
GTTCACGCTCGAGCGTGCGCAATTGCCGTGGCATGCCGCCGGGCGGGCGGACGCGATCACGTGGTCGGCCAGCGGCCCGG
TGCGCATCGCGCTGACGGGCCCGAACGGCTGCGGAAAATCGACGCTGCTGCGCATGCTCGCCGGCGAACTCGCGCCACGC
TCCGGTGCGTGCACGACGCATGTGAGCGCCGCGTATCTCGACCAGCGGCTCGCGCTGCTCGACCCCGAGCGCTCGATCGT
CGAGCAGTTGGGCCTGCTCGATACGCCGCTCGCCGAAGGCGAACTGCGCAGCCGGCTCGCGCTACTGCAGCTCGATGCCG
CACGCGCGACGCAGCCGGTGCACCGCCTGAGCGGCGGCGAACGGCTGAAGGCCGCGCTCGCGTGCGCGTTGTGGCGCGGC
ACGCCCGCGCAGCTGCTGCTGCTCGACGAGCCGACCAATCACCTCGATCTCGAATCGGTGCGCGCGATCGAAGCCGCGCT
GGCCGGCTTCCCCGGCGCGATCGTGGTCGCGTCGCACGACGCCGCGTTTCTTGCGGCGCTCGAACCGACGCACACGATGC
AATGGCAGCGCGACGGGTGGCGTTACGAACCCGTCGCGTGA

Upstream 100 bases:

>100_bases
GGACGCCAGCCAAAGTGAACAACTAAGCCTTCCCAAAAATGTTTTCGCCGCCGTGCCACGCACGCCGCGCGAAGGGTTTC
ACACATTTTCGGAGGTGCTT

Downstream 100 bases:

>100_bases
TCGACGATCACGACCGCTCGCCTTTGCGCGTGACGTCCGGATTGGAATCGGCGCGCCGCTGCCTGAAAAGGCGCTTCGAT
TCGCGCACGCCAGGGTCGGT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 545

Protein sequence:

>546_residues
MAAATPIGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGRRTPSAGTIDRHTPVVYVAQQH
DDAPAGTRTVAEIAALDAPLAALARLADGRAHALDFDLIGDRWDLVERLRAALDAAGLHDVRADTPAHALSGGQLARVAL
IGALLSDAGLLVLDEPTNHLDAAGRAWLRAALDGWRGGVVIVSHDRALLAHVQRIVELTPHGVRAYGGNYALYRAQRDAE
QDAAQAALEHAHAERGRVRRRLEQEHDTIQRHAAGALRDAKAANLSSMARQRRKGAARNIMGQVRRHQNDFKETLDERVQ
EAAARVEADAPVLVSLPGTEVSARRQLFTLERAQLPWHAAGRADAITWSASGPVRIALTGPNGCGKSTLLRMLAGELAPR
SGACTTHVSAAYLDQRLALLDPERSIVEQLGLLDTPLAEGELRSRLALLQLDAARATQPVHRLSGGERLKAALACALWRG
TPAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQWQRDGWRYEPVA

Sequences:

>Translated_546_residues
MAAATPIGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGRRTPSAGTIDRHTPVVYVAQQH
DDAPAGTRTVAEIAALDAPLAALARLADGRAHALDFDLIGDRWDLVERLRAALDAAGLHDVRADTPAHALSGGQLARVAL
IGALLSDAGLLVLDEPTNHLDAAGRAWLRAALDGWRGGVVIVSHDRALLAHVQRIVELTPHGVRAYGGNYALYRAQRDAE
QDAAQAALEHAHAERGRVRRRLEQEHDTIQRHAAGALRDAKAANLSSMARQRRKGAARNIMGQVRRHQNDFKETLDERVQ
EAAARVEADAPVLVSLPGTEVSARRQLFTLERAQLPWHAAGRADAITWSASGPVRIALTGPNGCGKSTLLRMLAGELAPR
SGACTTHVSAAYLDQRLALLDPERSIVEQLGLLDTPLAEGELRSRLALLQLDAARATQPVHRLSGGERLKAALACALWRG
TPAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQWQRDGWRYEPVA
>Mature_545_residues
AAATPIGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGRRTPSAGTIDRHTPVVYVAQQHD
DAPAGTRTVAEIAALDAPLAALARLADGRAHALDFDLIGDRWDLVERLRAALDAAGLHDVRADTPAHALSGGQLARVALI
GALLSDAGLLVLDEPTNHLDAAGRAWLRAALDGWRGGVVIVSHDRALLAHVQRIVELTPHGVRAYGGNYALYRAQRDAEQ
DAAQAALEHAHAERGRVRRRLEQEHDTIQRHAAGALRDAKAANLSSMARQRRKGAARNIMGQVRRHQNDFKETLDERVQE
AAARVEADAPVLVSLPGTEVSARRQLFTLERAQLPWHAAGRADAITWSASGPVRIALTGPNGCGKSTLLRMLAGELAPRS
GACTTHVSAAYLDQRLALLDPERSIVEQLGLLDTPLAEGELRSRLALLQLDAARATQPVHRLSGGERLKAALACALWRGT
PAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQWQRDGWRYEPVA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=517, Percent_Identity=27.4661508704062, Blast_Score=142, Evalue=8e-34,
Organism=Homo sapiens, GI10947137, Length=534, Percent_Identity=27.1535580524345, Blast_Score=136, Evalue=5e-32,
Organism=Homo sapiens, GI27881506, Length=534, Percent_Identity=27.1535580524345, Blast_Score=136, Evalue=5e-32,
Organism=Homo sapiens, GI10947135, Length=559, Percent_Identity=28.8014311270125, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI69354671, Length=559, Percent_Identity=28.8014311270125, Blast_Score=124, Evalue=3e-28,
Organism=Escherichia coli, GI1789751, Length=500, Percent_Identity=31.4, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI2367384, Length=532, Percent_Identity=32.5187969924812, Blast_Score=172, Evalue=7e-44,
Organism=Escherichia coli, GI1787182, Length=568, Percent_Identity=29.2253521126761, Blast_Score=166, Evalue=5e-42,
Organism=Escherichia coli, GI1787041, Length=520, Percent_Identity=25.7692307692308, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=35.9223300970874, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=521, Percent_Identity=28.2149712092131, Blast_Score=157, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17555318, Length=499, Percent_Identity=28.2565130260521, Blast_Score=154, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17553372, Length=522, Percent_Identity=27.7777777777778, Blast_Score=117, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6320874, Length=554, Percent_Identity=28.7003610108303, Blast_Score=135, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6321121, Length=542, Percent_Identity=24.5387453874539, Blast_Score=117, Evalue=4e-27,
Organism=Saccharomyces cerevisiae, GI6324314, Length=195, Percent_Identity=31.7948717948718, Blast_Score=77, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6325030, Length=200, Percent_Identity=30, Blast_Score=74, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6323278, Length=154, Percent_Identity=33.1168831168831, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24642252, Length=530, Percent_Identity=28.8679245283019, Blast_Score=161, Evalue=1e-39,
Organism=Drosophila melanogaster, GI18859989, Length=530, Percent_Identity=28.8679245283019, Blast_Score=161, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24666836, Length=509, Percent_Identity=29.4695481335953, Blast_Score=153, Evalue=4e-37,
Organism=Drosophila melanogaster, GI24641342, Length=507, Percent_Identity=28.4023668639053, Blast_Score=145, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58563; Mature: 58432

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAATPIGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGRR
CCCCCHHHHHHHHHHHEEEECCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHCCC
TPSAGTIDRHTPVVYVAQQHDDAPAGTRTVAEIAALDAPLAALARLADGRAHALDFDLIG
CCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECC
DRWDLVERLRAALDAAGLHDVRADTPAHALSGGQLARVALIGALLSDAGLLVLDEPTNHL
CHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
DAAGRAWLRAALDGWRGGVVIVSHDRALLAHVQRIVELTPHGVRAYGGNYALYRAQRDAE
HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEECHHHHH
QDAAQAALEHAHAERGRVRRRLEQEHDTIQRHAAGALRDAKAANLSSMARQRRKGAARNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGQVRRHQNDFKETLDERVQEAAARVEADAPVLVSLPGTEVSARRQLFTLERAQLPWHAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCC
GRADAITWSASGPVRIALTGPNGCGKSTLLRMLAGELAPRSGACTTHVSAAYLDQRLALL
CCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
DPERSIVEQLGLLDTPLAEGELRSRLALLQLDAARATQPVHRLSGGERLKAALACALWRG
CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHCHHHHCCCCHHHHHHHHHHHHCC
TPAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQWQRDGW
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCE
RYEPVA
EECCCC
>Mature Secondary Structure 
AAATPIGALVALHHVSFRFDDGVTLFDSLDLSIDRTPTGIVGRNGVGKSLLAQLIAGRR
CCCCHHHHHHHHHHHEEEECCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHCCC
TPSAGTIDRHTPVVYVAQQHDDAPAGTRTVAEIAALDAPLAALARLADGRAHALDFDLIG
CCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECC
DRWDLVERLRAALDAAGLHDVRADTPAHALSGGQLARVALIGALLSDAGLLVLDEPTNHL
CHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCHH
DAAGRAWLRAALDGWRGGVVIVSHDRALLAHVQRIVELTPHGVRAYGGNYALYRAQRDAE
HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEECHHHHH
QDAAQAALEHAHAERGRVRRRLEQEHDTIQRHAAGALRDAKAANLSSMARQRRKGAARNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGQVRRHQNDFKETLDERVQEAAARVEADAPVLVSLPGTEVSARRQLFTLERAQLPWHAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCC
GRADAITWSASGPVRIALTGPNGCGKSTLLRMLAGELAPRSGACTTHVSAAYLDQRLALL
CCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
DPERSIVEQLGLLDTPLAEGELRSRLALLQLDAARATQPVHRLSGGERLKAALACALWRG
CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHCHHHHCCCCHHHHHHHHHHHHCC
TPAQLLLLDEPTNHLDLESVRAIEAALAGFPGAIVVASHDAAFLAALEPTHTMQWQRDGW
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCE
RYEPVA
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]