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The map label for this gene is rpoH [H]

Identifier: 115352926

GI number: 115352926

Start: 3168619

End: 3169554

Strand: Direct

Name: rpoH [H]

Synonym: Bamb_2875

Alternate gene names: 115352926

Gene position: 3168619-3169554 (Clockwise)

Preceding gene: 115352923

Following gene: 115352927

Centisome position: 89.09

GC content: 65.38

Gene sequence:

>936_bases
GTGAGCCACGCCCTGACCCTTCCGAACACCCTGAGCCCGACGCCGGCCAAGGCCGAATCGGCAGGCTCGCTGGCGCTCGC
AACTCAATCGATGTTGCCGGGCCAGCTTGGCAACATCGACGCGTATATCCAGGCCGTCAACCGGATCCCGCTGCTGACCG
CCGAGGAAGAACGCCGCTATGCGACCGAATTCCGCGAAGACAACAACCTCGACTCGGCCCGCCGCCTCGTGCTGTCGCAC
CTGCGGCTCGTCGTGTCGATCGCGCGCAACTATCTCGGCTACGGCCTGCCGCACGGCGACCTGATCCAGGAAGGCAACAT
CGGCCTGATGAAGGCGGTGAAGCGTTTCGACCCGACGCAAAACGTGCGCCTGGTGTCGTACGCGATCCACTGGATCAAGG
CCGAGATCCACGAGTACATCCTGCGCAACTGGCGGATGGTGAAGGTCGCGACGACGAAGGCGCAGCGCAAGCTGTTCTTC
AACCTGCGCAGCCACAAGAAGAGCATGCAGGCGATGACGCCCGAGGAAATCGACGGCCTCGCGCAGGAGCTCAACGTCAA
GCGCGAAGACGTCACCGAAATGGAAACGCGCCTGTCGGGCGGCGACATCGCGCTCGAGGGGCAAGTTGATGACGGCGAGG
AGTCGTATGCGCCGATCGCCTACCTGGCCGATTCGCACAACGAGCCGAGCGCCGTGCTTGCCGCGCGTCAGCGCGACATG
CTGCAGACGGACGGCATCGCGCAGGCGCTCGAGGCGCTCGACGCACGCAGCCGCCGGATCATCGAGGCGCGCTGGCTGAA
CGTCGACGACGACGGCTCGGGCGGCTCGACGCTGCACGATCTCGCGGCCGAATTCGGCGTGTCGGCGGAACGCATCCGCC
AGATCGAAGCGAGCGCCATGAAGAAGATGCGCACCGCCCTCGCCGAATACGCATAA

Upstream 100 bases:

>100_bases
CCCTCTAAGGATTAGCACTCGGATTCCGGGAGTGCTAAGATGGGCCCCGGAATCTCATCCGAGACCAGGGGTTTGTCCCT
GATTCCAAAGGAGTTTTTTA

Downstream 100 bases:

>100_bases
ATCCGCGATTCAGCACGCTTCACCCAAAACCGCTGCCCGACTGGCAGCGGTTTTTTTTCGTCTGTCGTTTGTCTGTCGTT
TCGCGCGTCGCCGCGCTAAT

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSHALTLPNTLSPTPAKAESAGSLALATQSMLPGQLGNIDAYIQAVNRIPLLTAEEERRYATEFREDNNLDSARRLVLSH
LRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPTQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFF
NLRSHKKSMQAMTPEEIDGLAQELNVKREDVTEMETRLSGGDIALEGQVDDGEESYAPIAYLADSHNEPSAVLAARQRDM
LQTDGIAQALEALDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAEYA

Sequences:

>Translated_311_residues
MSHALTLPNTLSPTPAKAESAGSLALATQSMLPGQLGNIDAYIQAVNRIPLLTAEEERRYATEFREDNNLDSARRLVLSH
LRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPTQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFF
NLRSHKKSMQAMTPEEIDGLAQELNVKREDVTEMETRLSGGDIALEGQVDDGEESYAPIAYLADSHNEPSAVLAARQRDM
LQTDGIAQALEALDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAEYA
>Mature_310_residues
SHALTLPNTLSPTPAKAESAGSLALATQSMLPGQLGNIDAYIQAVNRIPLLTAEEERRYATEFREDNNLDSARRLVLSHL
RLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPTQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFN
LRSHKKSMQAMTPEEIDGLAQELNVKREDVTEMETRLSGGDIALEGQVDDGEESYAPIAYLADSHNEPSAVLAARQRDML
QTDGIAQALEALDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAEYA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=281, Percent_Identity=50.8896797153025, Blast_Score=278, Evalue=3e-76,
Organism=Escherichia coli, GI1789098, Length=272, Percent_Identity=33.4558823529412, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789448, Length=244, Percent_Identity=31.9672131147541, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 34595; Mature: 34463

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHALTLPNTLSPTPAKAESAGSLALATQSMLPGQLGNIDAYIQAVNRIPLLTAEEERRY
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEECHHHHHH
ATEFREDNNLDSARRLVLSHLRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPTQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCC
NVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKKSMQAMTPEEIDGL
CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AQELNVKREDVTEMETRLSGGDIALEGQVDDGEESYAPIAYLADSHNEPSAVLAARQRDM
HHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
LQTDGIAQALEALDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAM
HHHCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KKMRTALAEYA
HHHHHHHHHCC
>Mature Secondary Structure 
SHALTLPNTLSPTPAKAESAGSLALATQSMLPGQLGNIDAYIQAVNRIPLLTAEEERRY
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEECHHHHHH
ATEFREDNNLDSARRLVLSHLRLVVSIARNYLGYGLPHGDLIQEGNIGLMKAVKRFDPTQ
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHCCCCC
NVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKKSMQAMTPEEIDGL
CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AQELNVKREDVTEMETRLSGGDIALEGQVDDGEESYAPIAYLADSHNEPSAVLAARQRDM
HHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
LQTDGIAQALEALDARSRRIIEARWLNVDDDGSGGSTLHDLAAEFGVSAERIRQIEASAM
HHHCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KKMRTALAEYA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]