| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is insN [H]
Identifier: 115352887
GI number: 115352887
Start: 3128996
End: 3129343
Strand: Direct
Name: insN [H]
Synonym: Bamb_2836
Alternate gene names: 115352887
Gene position: 3128996-3129343 (Clockwise)
Preceding gene: 115352879
Following gene: 115352890
Centisome position: 87.98
GC content: 56.9
Gene sequence:
>348_bases ATGCTCGCCATGAAGAGATGTCCGATGACCAAACAACGTCGTACGTTTTCCCCGGAGTTCAAACAGCAAGCTGCCTGCCT AGTGCTCGACCAAGGCTATCGCTATACCGAGGCGAGCCGCTCAGTCGACGTCGGCGAATCGGTATCGCGTCGTGGGGTGC AGCAGCTTCAACTAGAGCGCCAAGGCGTCACACCGCAGGGCAAGGCGATTACGCCGGATCAACAACGTATCGAGGAATTC GAGGCACGCATTGAACGCCTCGAGCGGGAGAAGGCCATTTTAAAAAAGGCTACCGCGCTCTTGATGTCGGATGGCACTAC GCAGTCGCGTGCACGCGTTGTTCATTGA
Upstream 100 bases:
>100_bases TGATACATTATTTGCACGATTAATTTGTGGAATATCGCATATCTCTTGGGGGTGTGTCCTTGTAGTGGTCTAATGAATCC GGGCACTGAATTAGACGAGA
Downstream 100 bases:
>100_bases GGGCCGAAGTTCGGCCAGTAGCCGCGGCATCGTGGGCATGATGCGCGAACAACCACCAATTTGGTTGCTCGTGTCCCCCT GGGCGTTCGGCACCAGTCCG
Product: transposase IS3/IS911 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 115; Mature: 115
Protein sequence:
>115_residues MLAMKRCPMTKQRRTFSPEFKQQAACLVLDQGYRYTEASRSVDVGESVSRRGVQQLQLERQGVTPQGKAITPDQQRIEEF EARIERLEREKAILKKATALLMSDGTTQSRARVVH
Sequences:
>Translated_115_residues MLAMKRCPMTKQRRTFSPEFKQQAACLVLDQGYRYTEASRSVDVGESVSRRGVQQLQLERQGVTPQGKAITPDQQRIEEF EARIERLEREKAILKKATALLMSDGTTQSRARVVH >Mature_115_residues MLAMKRCPMTKQRRTFSPEFKQQAACLVLDQGYRYTEASRSVDVGESVSRRGVQQLQLERQGVTPQGKAITPDQQRIEEF EARIERLEREKAILKKATALLMSDGTTQSRARVVH
Specific function: Involved in the transposition of the insertion sequence IS911 [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 8 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002514 [H]
Pfam domain/function: PF01527 Transposase_8 [H]
EC number: NA
Molecular weight: Translated: 13151; Mature: 13151
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAMKRCPMTKQRRTFSPEFKQQAACLVLDQGYRYTEASRSVDVGESVSRRGVQQLQLER CCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH QGVTPQGKAITPDQQRIEEFEARIERLEREKAILKKATALLMSDGTTQSRARVVH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MLAMKRCPMTKQRRTFSPEFKQQAACLVLDQGYRYTEASRSVDVGESVSRRGVQQLQLER CCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH QGVTPQGKAITPDQQRIEEFEARIERLEREKAILKKATALLMSDGTTQSRARVVH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2163395 [H]