Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is ybeZ [H]

Identifier: 115352798

GI number: 115352798

Start: 3025299

End: 3026345

Strand: Direct

Name: ybeZ [H]

Synonym: Bamb_2747

Alternate gene names: 115352798

Gene position: 3025299-3026345 (Clockwise)

Preceding gene: 115352797

Following gene: 115352799

Centisome position: 85.06

GC content: 69.34

Gene sequence:

>1047_bases
TTGAAGACCGTCCAAGCACTGGAATTCACCGCGCCGCGCGAAGACAACGCGCGCCTCGCCAACCTCTGCGGCCCGCTCGA
CGAGAATCTGCGGCAGATCGAACAGGCGCTCGACGTCACGCTCGCGCGGCGCGGCCACCGGATCACGATCCGCGGGCGCG
GCGCGAAGCTCGCGCTCGCGGCGCTCGAGAACTTCTACAACCGCTCGCGCGATCCGCTGTCGGTCGACGATATCCAGCTC
GCGCTGGTCGAAGTGCGTCACACCGCCGGCAACGGCCGCCAGGACACGCTCGACGTGCGCTTTCGCGGCGACCCGGACCA
TCCGTTCGACGAACCGGCCGTGCAGCTCGACGACGCGGGGCCCGAGGAGGAACCTGGGCCGAAGCTGTACACGCGGCGCG
CCGACCTGCGCGGGCGCACGCCCGCTCAGCGCGAATACCTGAAGCAGATCCTGTCGCACGACGTGACGTTCGGCATCGGG
CCGGCCGGCACCGGCAAGACCTACCTCGCGGTTGCGTGCGCGGTCGACGCGCTCGAGCGCGACCAGGTCAAGCGGATCGT
GCTGACGCGCCCGGCCGTCGAGGCCGGCGAGCGGCTCGGCTTCCTGCCGGGCGATCTCGCGCAGAAGGTCGATCCGTACC
TGCGGCCGCTGTACGACGCGCTGTACGACCTGCTCGGCTTCGACAAGACGGCGAAGATGTTCGAGCGCCAGATGATCGAG
ATCGCGCCGCTCGCGTACATGCGCGGCCGCACGCTGAACCACGCGTTCATCATCCTCGACGAGGCGCAGAACACGACGCC
CGAGCAGATGAAGATGTTCCTCACGCGGATCGGCTTCGGCTCGAAGGCCGTCGTGACCGGCGACACGAGCCAGGTCGACC
TGCCGCGCGGGCACAAGAGCGGCCTGGTGGAGGCGCAGCAAGTGCTCGGCGGCGTGCGCGGCATCGCGCTCACGCGCTTC
ACGAGCGTGGACGTCGTGCGTCATCCGCTCGTCGCGCGCATCGTCGAGGCGTACGACGACTTCCACGCGCAGCACAAGGA
CGTGTGA

Upstream 100 bases:

>100_bases
GTACCCGCATTCGCTGCGCGGCGAGCTGCTGCTCGTGAGCGACGACGCGAGCGCGGCCACCCATTGACCGACTGACGCCC
GACAGGAGCCCGACGCTACT

Downstream 100 bases:

>100_bases
CGCACGGGCGGCGCCCGCGCGCCGCACCGGCCCACGGCCCGGCCCGCCCGACGGCGCGCCGGGCTTTTTTTCGCTCGCAC
GCGGCCGGTGCGAATTCGGG

Product: PhoH family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALAALENFYNRSRDPLSVDDIQL
ALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAGPEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIG
PAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE
IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRF
TSVDVVRHPLVARIVEAYDDFHAQHKDV

Sequences:

>Translated_348_residues
MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALAALENFYNRSRDPLSVDDIQL
ALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAGPEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIG
PAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE
IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRF
TSVDVVRHPLVARIVEAYDDFHAQHKDV
>Mature_348_residues
MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALAALENFYNRSRDPLSVDDIQL
ALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAGPEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIG
PAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE
IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRF
TSVDVVRHPLVARIVEAYDDFHAQHKDV

Specific function: Unknown

COG id: COG1702

COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phoH family [H]

Homologues:

Organism=Escherichia coli, GI145693103, Length=343, Percent_Identity=52.4781341107872, Blast_Score=323, Evalue=1e-89,
Organism=Escherichia coli, GI1787257, Length=204, Percent_Identity=48.0392156862745, Blast_Score=183, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003714 [H]

Pfam domain/function: PF02562 PhoH [H]

EC number: NA

Molecular weight: Translated: 38712; Mature: 38712

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALA
CCCCCCEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
ALENFYNRSRDPLSVDDIQLALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEECCCC
PEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIGPAGTGKTYLAVACAVDALER
CCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHH
DQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE
HHHHHHHHCCCCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKS
HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEECCCCCCC
GLVEAQQVLGGVRGIALTRFTSVDVVRHPLVARIVEAYDDFHAQHKDV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALA
CCCCCCEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
ALENFYNRSRDPLSVDDIQLALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEECCCC
PEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIGPAGTGKTYLAVACAVDALER
CCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHH
DQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE
HHHHHHHHCCCCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKS
HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEECCCCCCC
GLVEAQQVLGGVRGIALTRFTSVDVVRHPLVARIVEAYDDFHAQHKDV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]