| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is ybeZ [H]
Identifier: 115352798
GI number: 115352798
Start: 3025299
End: 3026345
Strand: Direct
Name: ybeZ [H]
Synonym: Bamb_2747
Alternate gene names: 115352798
Gene position: 3025299-3026345 (Clockwise)
Preceding gene: 115352797
Following gene: 115352799
Centisome position: 85.06
GC content: 69.34
Gene sequence:
>1047_bases TTGAAGACCGTCCAAGCACTGGAATTCACCGCGCCGCGCGAAGACAACGCGCGCCTCGCCAACCTCTGCGGCCCGCTCGA CGAGAATCTGCGGCAGATCGAACAGGCGCTCGACGTCACGCTCGCGCGGCGCGGCCACCGGATCACGATCCGCGGGCGCG GCGCGAAGCTCGCGCTCGCGGCGCTCGAGAACTTCTACAACCGCTCGCGCGATCCGCTGTCGGTCGACGATATCCAGCTC GCGCTGGTCGAAGTGCGTCACACCGCCGGCAACGGCCGCCAGGACACGCTCGACGTGCGCTTTCGCGGCGACCCGGACCA TCCGTTCGACGAACCGGCCGTGCAGCTCGACGACGCGGGGCCCGAGGAGGAACCTGGGCCGAAGCTGTACACGCGGCGCG CCGACCTGCGCGGGCGCACGCCCGCTCAGCGCGAATACCTGAAGCAGATCCTGTCGCACGACGTGACGTTCGGCATCGGG CCGGCCGGCACCGGCAAGACCTACCTCGCGGTTGCGTGCGCGGTCGACGCGCTCGAGCGCGACCAGGTCAAGCGGATCGT GCTGACGCGCCCGGCCGTCGAGGCCGGCGAGCGGCTCGGCTTCCTGCCGGGCGATCTCGCGCAGAAGGTCGATCCGTACC TGCGGCCGCTGTACGACGCGCTGTACGACCTGCTCGGCTTCGACAAGACGGCGAAGATGTTCGAGCGCCAGATGATCGAG ATCGCGCCGCTCGCGTACATGCGCGGCCGCACGCTGAACCACGCGTTCATCATCCTCGACGAGGCGCAGAACACGACGCC CGAGCAGATGAAGATGTTCCTCACGCGGATCGGCTTCGGCTCGAAGGCCGTCGTGACCGGCGACACGAGCCAGGTCGACC TGCCGCGCGGGCACAAGAGCGGCCTGGTGGAGGCGCAGCAAGTGCTCGGCGGCGTGCGCGGCATCGCGCTCACGCGCTTC ACGAGCGTGGACGTCGTGCGTCATCCGCTCGTCGCGCGCATCGTCGAGGCGTACGACGACTTCCACGCGCAGCACAAGGA CGTGTGA
Upstream 100 bases:
>100_bases GTACCCGCATTCGCTGCGCGGCGAGCTGCTGCTCGTGAGCGACGACGCGAGCGCGGCCACCCATTGACCGACTGACGCCC GACAGGAGCCCGACGCTACT
Downstream 100 bases:
>100_bases CGCACGGGCGGCGCCCGCGCGCCGCACCGGCCCACGGCCCGGCCCGCCCGACGGCGCGCCGGGCTTTTTTTCGCTCGCAC GCGGCCGGTGCGAATTCGGG
Product: PhoH family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALAALENFYNRSRDPLSVDDIQL ALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAGPEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIG PAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRF TSVDVVRHPLVARIVEAYDDFHAQHKDV
Sequences:
>Translated_348_residues MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALAALENFYNRSRDPLSVDDIQL ALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAGPEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIG PAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRF TSVDVVRHPLVARIVEAYDDFHAQHKDV >Mature_348_residues MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALAALENFYNRSRDPLSVDDIQL ALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAGPEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIG PAGTGKTYLAVACAVDALERDQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKSGLVEAQQVLGGVRGIALTRF TSVDVVRHPLVARIVEAYDDFHAQHKDV
Specific function: Unknown
COG id: COG1702
COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phoH family [H]
Homologues:
Organism=Escherichia coli, GI145693103, Length=343, Percent_Identity=52.4781341107872, Blast_Score=323, Evalue=1e-89, Organism=Escherichia coli, GI1787257, Length=204, Percent_Identity=48.0392156862745, Blast_Score=183, Evalue=2e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 38712; Mature: 38712
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALA CCCCCCEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH ALENFYNRSRDPLSVDDIQLALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAG HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEECCCC PEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIGPAGTGKTYLAVACAVDALER CCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHH DQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE HHHHHHHHCCCCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKS HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEECCCCCCC GLVEAQQVLGGVRGIALTRFTSVDVVRHPLVARIVEAYDDFHAQHKDV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKTVQALEFTAPREDNARLANLCGPLDENLRQIEQALDVTLARRGHRITIRGRGAKLALA CCCCCCEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH ALENFYNRSRDPLSVDDIQLALVEVRHTAGNGRQDTLDVRFRGDPDHPFDEPAVQLDDAG HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEECCCC PEEEPGPKLYTRRADLRGRTPAQREYLKQILSHDVTFGIGPAGTGKTYLAVACAVDALER CCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHH DQVKRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLLGFDKTAKMFERQMIE HHHHHHHHCCCCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH IAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVVTGDTSQVDLPRGHKS HHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCEECCCCCCC GLVEAQQVLGGVRGIALTRFTSVDVVRHPLVARIVEAYDDFHAQHKDV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]