Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115352734

Identifier: 115352734

GI number: 115352734

Start: 2954135

End: 2954752

Strand: Direct

Name: 115352734

Synonym: Bamb_2683

Alternate gene names: NA

Gene position: 2954135-2954752 (Clockwise)

Preceding gene: 115352733

Following gene: 115352736

Centisome position: 83.06

GC content: 71.84

Gene sequence:

>618_bases
ATGGATGACATCGTCAGGCAGGCTCTCGCCAAGTGGCCGAACGTACCCGACTGCACCGGTTGGCTGCTGCTCGACCGGCG
CGGCGAGTGGCGGCTGCGCGACGACGCCGCGCAGGCCGCCGGAGAGCTCGGCTCGCCGATTCGGCATGCGGCGCTCAACG
CGTTCATCGGACGCAACTACGAATGCGACGCGCACGGCCAGTGGTTCTTCCAGAACGGGCCGCAGCGCGTGTACGTCGAA
CTCGCGTACACGCCGTGGGTCGTGCGCCTGGCCGAACGCGACGGGCAGCTCACGCTGGCCGACCAGACCGGCGCGCCGTT
CGAGCCCGACGCCGCATGGCTCGACGATGCGGGCGGCGTGCTGTTCCGCGCGGCGGGCACGCCGCCGCGCATCGCGGCGC
TGCACGACCACGACCTCGGCCTGTTCGCCGATCATGCGGACTTCGACGCGATGCCGCCCATGCTGCGCTGGCGTGATGGG
CGCACGCTGGCGCTCGGCAACCTGGCGTGTGCCGATGTGCCGGCAACGTTCGGCTTCGTCGCGAGCCCCGCGCAGCGGGC
GCGGTGCGACGCGCCGGATGGTGGCAACGGCAACAGCAACGACGGCGCCGCAAGCTGA

Upstream 100 bases:

>100_bases
ATGGACGGCGGCCATGCGGGATTCATGACCGGACCGTTCCCCGGCCGCCTCGACTGGCTGTCGGCGCGGGTGTTCGGCTA
TTGCTCGAAATTCGTCGATC

Downstream 100 bases:

>100_bases
AGCGCCGCCGCCCTGCCCACCTGACTGCCGTTATCCGCGGCCGTTCTTCTCGTCCTCGCGCTCTTCCTTGTAGCGCGCCT
CGAATTCCAGCAGCCGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MDDIVRQALAKWPNVPDCTGWLLLDRRGEWRLRDDAAQAAGELGSPIRHAALNAFIGRNYECDAHGQWFFQNGPQRVYVE
LAYTPWVVRLAERDGQLTLADQTGAPFEPDAAWLDDAGGVLFRAAGTPPRIAALHDHDLGLFADHADFDAMPPMLRWRDG
RTLALGNLACADVPATFGFVASPAQRARCDAPDGGNGNSNDGAAS

Sequences:

>Translated_205_residues
MDDIVRQALAKWPNVPDCTGWLLLDRRGEWRLRDDAAQAAGELGSPIRHAALNAFIGRNYECDAHGQWFFQNGPQRVYVE
LAYTPWVVRLAERDGQLTLADQTGAPFEPDAAWLDDAGGVLFRAAGTPPRIAALHDHDLGLFADHADFDAMPPMLRWRDG
RTLALGNLACADVPATFGFVASPAQRARCDAPDGGNGNSNDGAAS
>Mature_205_residues
MDDIVRQALAKWPNVPDCTGWLLLDRRGEWRLRDDAAQAAGELGSPIRHAALNAFIGRNYECDAHGQWFFQNGPQRVYVE
LAYTPWVVRLAERDGQLTLADQTGAPFEPDAAWLDDAGGVLFRAAGTPPRIAALHDHDLGLFADHADFDAMPPMLRWRDG
RTLALGNLACADVPATFGFVASPAQRARCDAPDGGNGNSNDGAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22237; Mature: 22237

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDIVRQALAKWPNVPDCTGWLLLDRRGEWRLRDDAAQAAGELGSPIRHAALNAFIGRNY
CHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECHHHHHHHHHCCCHHHHHHHHHHHCCCE
ECDAHGQWFFQNGPQRVYVELAYTPWVVRLAERDGQLTLADQTGAPFEPDAAWLDDAGGV
EECCCCCEEEECCCEEEEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCEECCCCCE
LFRAAGTPPRIAALHDHDLGLFADHADFDAMPPMLRWRDGRTLALGNLACADVPATFGFV
EEEECCCCCEEEEEECCCCCEEECCCCCCCCCCCEEECCCCEEEECCEEECCCCCHHCHH
ASPAQRARCDAPDGGNGNSNDGAAS
CCCHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDDIVRQALAKWPNVPDCTGWLLLDRRGEWRLRDDAAQAAGELGSPIRHAALNAFIGRNY
CHHHHHHHHHHCCCCCCCCEEEEEECCCCCEECHHHHHHHHHCCCHHHHHHHHHHHCCCE
ECDAHGQWFFQNGPQRVYVELAYTPWVVRLAERDGQLTLADQTGAPFEPDAAWLDDAGGV
EECCCCCEEEECCCEEEEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCEECCCCCE
LFRAAGTPPRIAALHDHDLGLFADHADFDAMPPMLRWRDGRTLALGNLACADVPATFGFV
EEEECCCCCEEEEEECCCCCEEECCCCCCCCCCCEEECCCCEEEECCEEECCCCCHHCHH
ASPAQRARCDAPDGGNGNSNDGAAS
CCCHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA