| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is scbA [H]
Identifier: 115352699
GI number: 115352699
Start: 2914323
End: 2915237
Strand: Direct
Name: scbA [H]
Synonym: Bamb_2648
Alternate gene names: 115352699
Gene position: 2914323-2915237 (Clockwise)
Preceding gene: 115352698
Following gene: 115352700
Centisome position: 81.94
GC content: 68.09
Gene sequence:
>915_bases ATGTCCATTGCCCTGAAGCGCGCGCCACGACGCGCCCAGCCGCTTGTTCGCCTGCTGGCCGCCTCGGCTGCCGCGCTGTC GATCGCGGCGCCCGCCTGCGCGCAGGCCGCGACCGTCAACGTCGTCGCCGCCGAGAATTTCTATGGCGACGTCGCATCGC AGATCGGCGGCCGCCATGTCGCGGTCACCAGCATCCTCAGCAATCCCGACCAGGATCCGCACCTGTTCGAAGCGAGCCCG AAGACCGCGCGCGCGCTGCAGCATGCGCAGGTCGTGATCTACAACGGCGCGAACTACGATCCGTGGATGAGCAAGCTGCT CGGCGCGTCGAAGCAGGCGAAGCGCGCGACGATCGTCGTCGCCGATCTCGTCGGCAAGAAGGCCGGCGACAACCCGCACG TCTGGTACGACCCGGCGACCATGCCGGCCGCCGCGCGCGCGATCGCGGCCGAATTCGGCCGTGCCGATCCGGCGAACAAG GCCGACTACGACGCGAACCTGCAAAAGTTCGTCGCGTCGCTGAAACCCGTCGACGACAAGGTCGCCGCGCTGCGCGCGCA GTACAAGGGCGTGCCGGTGACGGCCACGGAGCCCGTGTTCGGCTACATGTCCGACGCGATCGGCCTCGACATGCGCAACC AGCGCTTCCAGCTCGCGACGATGAACGACACCGAAGCCAGCGCGCAGGACGTCGCCGCGTTCGAGAACGACCTGCGCAAG AAGCAGGTGCGCGTGCTGATCTACAACAGCCAGGCCGAAGCGCCGATGACCAAGCGCCTGCTGAAAATCGCGCGCGACGG CGGCGTGCCGAGCGTGAGCGTCACCGAGACGCAACCGGCCGGCAAGACCTTCCAGCAATGGATGACCGGCCAGCTCGACG CGCTCGCGGCCGCGCTTTCCGCCAGCAAGAAATGA
Upstream 100 bases:
>100_bases GAGCTGAACGGCCTGTGCGGGCACTGCAAGGGCAAGCCCGCGCATCGCTGACGCCGCCCCGCGCGGCGCTCGGCGCCGCC CCCTTCCAACGAGGAGTTCC
Downstream 100 bases:
>100_bases TCGACGCAACGACATGAGCCCCACTCCCCACGCACTCGCACTCGATCGCGTCACGCTCGAACTGGGCGGCCGCACGATCC TGCGCGACGTCAGCTTCTCG
Product: periplasmic solute binding protein
Products: Zn (II) [Cytoplasm]; ADP; phosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MSIALKRAPRRAQPLVRLLAASAAALSIAAPACAQAATVNVVAAENFYGDVASQIGGRHVAVTSILSNPDQDPHLFEASP KTARALQHAQVVIYNGANYDPWMSKLLGASKQAKRATIVVADLVGKKAGDNPHVWYDPATMPAAARAIAAEFGRADPANK ADYDANLQKFVASLKPVDDKVAALRAQYKGVPVTATEPVFGYMSDAIGLDMRNQRFQLATMNDTEASAQDVAAFENDLRK KQVRVLIYNSQAEAPMTKRLLKIARDGGVPSVSVTETQPAGKTFQQWMTGQLDALAAALSASKK
Sequences:
>Translated_304_residues MSIALKRAPRRAQPLVRLLAASAAALSIAAPACAQAATVNVVAAENFYGDVASQIGGRHVAVTSILSNPDQDPHLFEASP KTARALQHAQVVIYNGANYDPWMSKLLGASKQAKRATIVVADLVGKKAGDNPHVWYDPATMPAAARAIAAEFGRADPANK ADYDANLQKFVASLKPVDDKVAALRAQYKGVPVTATEPVFGYMSDAIGLDMRNQRFQLATMNDTEASAQDVAAFENDLRK KQVRVLIYNSQAEAPMTKRLLKIARDGGVPSVSVTETQPAGKTFQQWMTGQLDALAAALSASKK >Mature_303_residues SIALKRAPRRAQPLVRLLAASAAALSIAAPACAQAATVNVVAAENFYGDVASQIGGRHVAVTSILSNPDQDPHLFEASPK TARALQHAQVVIYNGANYDPWMSKLLGASKQAKRATIVVADLVGKKAGDNPHVWYDPATMPAAARAIAAEFGRADPANKA DYDANLQKFVASLKPVDDKVAALRAQYKGVPVTATEPVFGYMSDAIGLDMRNQRFQLATMNDTEASAQDVAAFENDLRKK QVRVLIYNSQAEAPMTKRLLKIARDGGVPSVSVTETQPAGKTFQQWMTGQLDALAAALSASKK
Specific function: Part of an ATP-driven transport system for manganese. Does not exhibit adhesion properties [H]
COG id: COG0803
COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface adhesin
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 9 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006127 - InterPro: IPR006129 - InterPro: IPR006128 [H]
Pfam domain/function: PF01297 SBP_bac_9 [H]
EC number: NA
Molecular weight: Translated: 32399; Mature: 32268
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIALKRAPRRAQPLVRLLAASAAALSIAAPACAQAATVNVVAAENFYGDVASQIGGRHV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECHHHHHHHHHHCCCEE AVTSILSNPDQDPHLFEASPKTARALQHAQVVIYNGANYDPWMSKLLGASKQAKRATIVV EEHHHHCCCCCCCCEECCCCHHHHHHHHCEEEEEECCCCCHHHHHHHCCCCCCCHHEEEE ADLVGKKAGDNPHVWYDPATMPAAARAIAAEFGRADPANKADYDANLQKFVASLKPVDDK EHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHH VAALRAQYKGVPVTATEPVFGYMSDAIGLDMRNQRFQLATMNDTEASAQDVAAFENDLRK HHHHHHHHCCCCCEECCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH KQVRVLIYNSQAEAPMTKRLLKIARDGGVPSVSVTETQPAGKTFQQWMTGQLDALAAALS CEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHH ASKK HCCC >Mature Secondary Structure SIALKRAPRRAQPLVRLLAASAAALSIAAPACAQAATVNVVAAENFYGDVASQIGGRHV CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECHHHHHHHHHHCCCEE AVTSILSNPDQDPHLFEASPKTARALQHAQVVIYNGANYDPWMSKLLGASKQAKRATIVV EEHHHHCCCCCCCCEECCCCHHHHHHHHCEEEEEECCCCCHHHHHHHCCCCCCCHHEEEE ADLVGKKAGDNPHVWYDPATMPAAARAIAAEFGRADPANKADYDANLQKFVASLKPVDDK EHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHH VAALRAQYKGVPVTATEPVFGYMSDAIGLDMRNQRFQLATMNDTEASAQDVAAFENDLRK HHHHHHHHCCCCCEECCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH KQVRVLIYNSQAEAPMTKRLLKIARDGGVPSVSVTETQPAGKTFQQWMTGQLDALAAALS CEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHH ASKK HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Zn (II) [Periplasm]; H2O; ATP [C]
Specific reaction: Zn (II) [Periplasm] + H2O + ATP = Zn (II) [Cytoplasm] + ADP + phosphate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8675315 [H]