| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yjeE [H]
Identifier: 115352661
GI number: 115352661
Start: 2873584
End: 2874180
Strand: Direct
Name: yjeE [H]
Synonym: Bamb_2610
Alternate gene names: 115352661
Gene position: 2873584-2874180 (Clockwise)
Preceding gene: 115352657
Following gene: 115352662
Centisome position: 80.8
GC content: 65.49
Gene sequence:
>597_bases ATGCGGCGAGTTCCGGTAAGCGGTTCATCGCACTATTTTACGAGAATGCCAGCCACGTCCCATACGCCTCATGCAGACAC GCTGCCCGCCCCGCTCGCGGAGCGCGTGATCGCACTCGCCGACGAAGCGGCGACCGAGGCTTTCGGCACCCGCTTCGCGC ACGCGCTCGACGCGGCGCGCGGCGAACTCGCCCGCGCGCACGCGTTCGACGGGCTGCAGATCCAGCTGATCGGCGACCTC GGCGCGGGCAAGACGACCCTCGTGCGCGCGATCCTGCGCGGCCTCGGCCACCCGGGACGCGTGCGCAGCCCGACCTATAC GCTCGTCGAGCCGTATGCATTCGCACGCGACGATGGGGAACTTGAGGTCTATCACTTCGATCTGTATCGATTCAACGATC CGGCCGAATGGTCCGACGCGGGGTTTCGCGAATATTTCAATTCCAGCGCGATCTGCCTCGTCGAATGGCCCCAACAGGCG GGCACCCTGCTCGGCGTGCCCGATCTGGTTTTCTCGCTCGACGTGGACGGCGACGGTCGCGCCCTCACCGTCAGGGCGTT CAGCGCTTCAGGAAAGGCATGTCTCGAAAGATGTTGA
Upstream 100 bases:
>100_bases TCGCGCCCCCACGCCTTGATGCGAGTGGCGAGCGCAGTCAACGTCGCATCATCGAGCGCGCACGGCGCCGCGCCTTCGGT ACGAGTCGAAGGCTTGTCGG
Downstream 100 bases:
>100_bases TCAAACCGTTCCGCTCGATCGAATCGGCGGCCACCGCGACGCACAACTGGCGGCGCCGCCAGATCCTGCGCGCGGGCGCG TCGACGCTGGTGCTCGGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 198; Mature: 198
Protein sequence:
>198_residues MRRVPVSGSSHYFTRMPATSHTPHADTLPAPLAERVIALADEAATEAFGTRFAHALDAARGELARAHAFDGLQIQLIGDL GAGKTTLVRAILRGLGHPGRVRSPTYTLVEPYAFARDDGELEVYHFDLYRFNDPAEWSDAGFREYFNSSAICLVEWPQQA GTLLGVPDLVFSLDVDGDGRALTVRAFSASGKACLERC
Sequences:
>Translated_198_residues MRRVPVSGSSHYFTRMPATSHTPHADTLPAPLAERVIALADEAATEAFGTRFAHALDAARGELARAHAFDGLQIQLIGDL GAGKTTLVRAILRGLGHPGRVRSPTYTLVEPYAFARDDGELEVYHFDLYRFNDPAEWSDAGFREYFNSSAICLVEWPQQA GTLLGVPDLVFSLDVDGDGRALTVRAFSASGKACLERC >Mature_198_residues MRRVPVSGSSHYFTRMPATSHTPHADTLPAPLAERVIALADEAATEAFGTRFAHALDAARGELARAHAFDGLQIQLIGDL GAGKTTLVRAILRGLGHPGRVRSPTYTLVEPYAFARDDGELEVYHFDLYRFNDPAEWSDAGFREYFNSSAICLVEWPQQA GTLLGVPDLVFSLDVDGDGRALTVRAFSASGKACLERC
Specific function: Unknown
COG id: COG0802
COG function: function code R; Predicted ATPase or kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0079 family [H]
Homologues:
Organism=Escherichia coli, GI1790610, Length=166, Percent_Identity=48.1927710843374, Blast_Score=140, Evalue=5e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003442 [H]
Pfam domain/function: PF02367 UPF0079 [H]
EC number: NA
Molecular weight: Translated: 21535; Mature: 21535
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVPVSGSSHYFTRMPATSHTPHADTLPAPLAERVIALADEAATEAFGTRFAHALDAAR CCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GELARAHAFDGLQIQLIGDLGAGKTTLVRAILRGLGHPGRVRSPTYTLVEPYAFARDDGE HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEECCCCC LEVYHFDLYRFNDPAEWSDAGFREYFNSSAICLVEWPQQAGTLLGVPDLVFSLDVDGDGR EEEEEEEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEECCCEEEEEEECCCCC ALTVRAFSASGKACLERC EEEEEEECCCCHHHHHCC >Mature Secondary Structure MRRVPVSGSSHYFTRMPATSHTPHADTLPAPLAERVIALADEAATEAFGTRFAHALDAAR CCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GELARAHAFDGLQIQLIGDLGAGKTTLVRAILRGLGHPGRVRSPTYTLVEPYAFARDDGE HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEECCCCC LEVYHFDLYRFNDPAEWSDAGFREYFNSSAICLVEWPQQAGTLLGVPDLVFSLDVDGDGR EEEEEEEEEEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEECCCEEEEEEECCCCC ALTVRAFSASGKACLERC EEEEEEECCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP [C]
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]