Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352626

Identifier: 115352626

GI number: 115352626

Start: 2835899

End: 2836399

Strand: Direct

Name: 115352626

Synonym: Bamb_2575

Alternate gene names: NA

Gene position: 2835899-2836399 (Clockwise)

Preceding gene: 115352624

Following gene: 115352627

Centisome position: 79.74

GC content: 67.07

Gene sequence:

>501_bases
GTGCGATTCTCCCTGCGCTCGTCGCTCGGCCGCCTTGCGCGCGCCGCCGTGTTCCCCGTCGCGCTCGCCGTCCTCGCACT
CGGCGTGCACACCGCCCACGCGCAGATGCCGCCCGGCGCCAAGCAGCCGAGCGAGTTCCCGCACGTGAAGCTGCGCGCCG
GCATGTACGTGATCGACGCGGCCGTCGCCGCGAACGACGCCGACCGCGAACAGGGGCTGATGTACCGGTCGCAGCTCGGG
CCGAACGAAGGCATGCTGTTCGTGTTCAACGAGAACGCCGTGCACTGCTTCTGGATGAAGAACACGCTGATTCCGCTGTC
GATCGCGTTCATCCGCGCGGACGGCACGATCACCGACATCGACGAGATGCGGGCCGAGACGACCGACAATCACTGCCCGC
GCAACAACGGCGTCTATGCGCTAGAAATGAGCAAGGGCTGGTTCGCCGCGAAGGGCATCAAGCCGGGCATGAAGCTCGAC
GGGCTGCCCAAGCCCCAGTAA

Upstream 100 bases:

>100_bases
AAAGGCAGATCACCGCGAGGCGATCTGCCTTTTTCTTTTTGTGCCCGCCGGCGCGCTTCGCGTACCATGCGGGTCTCGTT
TTCCCGATAGGAGCCTTGCT

Downstream 100 bases:

>100_bases
CGGCGAGTGCCGCGGCGGCGCCGCGCATCGACCGAAGCCGGCCGCCCGTTGCGCGCCGGCTTTTTTTTCGCGCGCCGGCG
GCGCCCGCCTTGATTCGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Signal Peptide Protein; Lipoprotein; Secreted Protein

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MRFSLRSSLGRLARAAVFPVALAVLALGVHTAHAQMPPGAKQPSEFPHVKLRAGMYVIDAAVAANDADREQGLMYRSQLG
PNEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDIDEMRAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLD
GLPKPQ

Sequences:

>Translated_166_residues
MRFSLRSSLGRLARAAVFPVALAVLALGVHTAHAQMPPGAKQPSEFPHVKLRAGMYVIDAAVAANDADREQGLMYRSQLG
PNEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDIDEMRAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLD
GLPKPQ
>Mature_166_residues
MRFSLRSSLGRLARAAVFPVALAVLALGVHTAHAQMPPGAKQPSEFPHVKLRAGMYVIDAAVAANDADREQGLMYRSQLG
PNEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDIDEMRAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLD
GLPKPQ

Specific function: Unknown

COG id: COG1430

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18166; Mature: 18166

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSLRSSLGRLARAAVFPVALAVLALGVHTAHAQMPPGAKQPSEFPHVKLRAGMYVIDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEEE
AVAANDADREQGLMYRSQLGPNEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDI
EHHCCCCCHHHCCEEHHHCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEECCCCEECH
DEMRAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLDGLPKPQ
HHHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFSLRSSLGRLARAAVFPVALAVLALGVHTAHAQMPPGAKQPSEFPHVKLRAGMYVIDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEEE
AVAANDADREQGLMYRSQLGPNEGMLFVFNENAVHCFWMKNTLIPLSIAFIRADGTITDI
EHHCCCCCHHHCCEEHHHCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEECCCCEECH
DEMRAETTDNHCPRNNGVYALEMSKGWFAAKGIKPGMKLDGLPKPQ
HHHHHHCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA