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The map label for this gene is pecT [H]

Identifier: 115352582

GI number: 115352582

Start: 2788814

End: 2789707

Strand: Direct

Name: pecT [H]

Synonym: Bamb_2531

Alternate gene names: 115352582

Gene position: 2788814-2789707 (Clockwise)

Preceding gene: 115352580

Following gene: 115352585

Centisome position: 78.41

GC content: 73.27

Gene sequence:

>894_bases
ATGGAACCAACCGATCGCGCATCGACCGCGCTCGACATCGCGCTGTTGCGCACCTTCCTCGAAGTCGTCGACAGCCGCGG
CTTCGCGCCGGCCGCTGAGCGCCTCGCGCTGACGCCGTCCGCGGTCAGCGGCCACATCAAGCGGCTCGAGCAGGCAGCCG
GCACGGTGCTGCTCGCGCGCACCACGCGCCGCGTCGCGCTCACGCCGGCCGGCGACACGCTGTACGCGTACGCGCGCAAC
ATCGTCGACATGGAGCGCGAAGTGCGTGCCCGGCTGCGCGGCGCGCCCGCGCATGGCCGGCTGCGCGTCGGCGCGTCGGA
GGACTTCGCGGGCACGTGGCTGCCGCAGGTGTTGCGCACGTTCCGCGACAACCATCCGCGCACGTCGATCGAACTGAAGG
TCGGGATCACCGCGTCGCTGCTGCGCGAGCAAGCGCTGGGCCGGCTCGACGTCGTGTTCGGCAAGCAATGCCGGCAGGTC
GACGCACCGGGCGAACTGCTATGGGAAGAGCCGCTCGTGTGGGCGTTCGCGTCGGATACGGCGCTCGATGCCGAGGGCGA
CGTGCCGCTCGCGCTGTTTCCGGAGCCGTGCGTGTACCGGGAAGCCGCGGTGTCCGCGCTCGCCGCCGCGCTGCGGCCGT
TTCGCGTGCTGTTCGAAAGCGGCAGCATGGCCGGGTGCGTATCGGCCGCGCTCGCCGGCTTCGCGGTCACGGCGCTCGCG
CGCAGCCAGTTGCGCGACGGGCTGCGCGCATGCGGGCCCGACGACGGCCTGCCGACGCTGCCGGCCGCGCGCTTTCATGC
GTTCGCGTCGAAGCCCGACGGTGCGGCAGCCGCGCTGATCGACGCGGTGCGGGCCACCGGGCGCAGCCGGCAGTTCGCCG
TGCGGTCCGGCTGA

Upstream 100 bases:

>100_bases
CACTCCGGTGAGTCGTCTGAAGGTCGATGGTAGACCCGCCTCTCATCACGATTCGCGGCGTATCATGATCCATTCTTCGA
ATATCGCGTTGAATCGACCC

Downstream 100 bases:

>100_bases
ACATGCACGCTGCGACCGCGACACCCGTCGACAAGCTCGCCCCTGCCGATTTCGGTCGGCGCAGGCAAACGCGGCGCCCT
TTTCAGGCGCCGCGCGCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MEPTDRASTALDIALLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLARTTRRVALTPAGDTLYAYARN
IVDMEREVRARLRGAPAHGRLRVGASEDFAGTWLPQVLRTFRDNHPRTSIELKVGITASLLREQALGRLDVVFGKQCRQV
DAPGELLWEEPLVWAFASDTALDAEGDVPLALFPEPCVYREAAVSALAAALRPFRVLFESGSMAGCVSAALAGFAVTALA
RSQLRDGLRACGPDDGLPTLPAARFHAFASKPDGAAAALIDAVRATGRSRQFAVRSG

Sequences:

>Translated_297_residues
MEPTDRASTALDIALLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLARTTRRVALTPAGDTLYAYARN
IVDMEREVRARLRGAPAHGRLRVGASEDFAGTWLPQVLRTFRDNHPRTSIELKVGITASLLREQALGRLDVVFGKQCRQV
DAPGELLWEEPLVWAFASDTALDAEGDVPLALFPEPCVYREAAVSALAAALRPFRVLFESGSMAGCVSAALAGFAVTALA
RSQLRDGLRACGPDDGLPTLPAARFHAFASKPDGAAAALIDAVRATGRSRQFAVRSG
>Mature_297_residues
MEPTDRASTALDIALLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLARTTRRVALTPAGDTLYAYARN
IVDMEREVRARLRGAPAHGRLRVGASEDFAGTWLPQVLRTFRDNHPRTSIELKVGITASLLREQALGRLDVVFGKQCRQV
DAPGELLWEEPLVWAFASDTALDAEGDVPLALFPEPCVYREAAVSALAAALRPFRVLFESGSMAGCVSAALAGFAVTALA
RSQLRDGLRACGPDDGLPTLPAARFHAFASKPDGAAAALIDAVRATGRSRQFAVRSG

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=265, Percent_Identity=30.9433962264151, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI48994962, Length=155, Percent_Identity=31.6129032258064, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=244, Percent_Identity=28.6885245901639, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=32.1678321678322, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790399, Length=187, Percent_Identity=28.3422459893048, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788887, Length=185, Percent_Identity=30.8108108108108, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=245, Percent_Identity=23.6734693877551, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=149, Percent_Identity=26.8456375838926, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI145693193, Length=122, Percent_Identity=34.4262295081967, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787589, Length=126, Percent_Identity=34.9206349206349, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788748, Length=186, Percent_Identity=31.1827956989247, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31712; Mature: 31712

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPTDRASTALDIALLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLAR
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCEEEEEE
TTRRVALTPAGDTLYAYARNIVDMEREVRARLRGAPAHGRLRVGASEDFAGTWLPQVLRT
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHH
FRDNHPRTSIELKVGITASLLREQALGRLDVVFGKQCRQVDAPGELLWEEPLVWAFASDT
HHCCCCCCEEEEEECHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCC
ALDAEGDVPLALFPEPCVYREAAVSALAAALRPFRVLFESGSMAGCVSAALAGFAVTALA
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RSQLRDGLRACGPDDGLPTLPAARFHAFASKPDGAAAALIDAVRATGRSRQFAVRSG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEECCC
>Mature Secondary Structure
MEPTDRASTALDIALLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLAR
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCEEEEEE
TTRRVALTPAGDTLYAYARNIVDMEREVRARLRGAPAHGRLRVGASEDFAGTWLPQVLRT
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHH
FRDNHPRTSIELKVGITASLLREQALGRLDVVFGKQCRQVDAPGELLWEEPLVWAFASDT
HHCCCCCCEEEEEECHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCC
ALDAEGDVPLALFPEPCVYREAAVSALAAALRPFRVLFESGSMAGCVSAALAGFAVTALA
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RSQLRDGLRACGPDDGLPTLPAARFHAFASKPDGAAAALIDAVRATGRSRQFAVRSG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]