| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352569
Identifier: 115352569
GI number: 115352569
Start: 2775379
End: 2775762
Strand: Direct
Name: 115352569
Synonym: Bamb_2518
Alternate gene names: NA
Gene position: 2775379-2775762 (Clockwise)
Preceding gene: 115352568
Following gene: 115352576
Centisome position: 78.04
GC content: 72.14
Gene sequence:
>384_bases ATGAGTTCGCACGGCATCGTCCTGTTCGGCCACGGCGCACGCGATCCGCGCTGGGCCGAGCCGTTCGAGCGGCTGGCCGC GCGGCTGCGCGGCAGCGGCGCACCCGCGCCGCACGTGTCGCTCGCGTTCCTCGAACTGATGACGCCTTCGCTCGACACGG CCGTCGCCGCGCAGGTCGCGGCCGGCTGCACGCGCATCACCGTGGTGCCCGTGTTCTTCGGCCAAGGGGGCCATGTCCGT CGCGACCTGCCGCAGCTCGTCGACGCCTGCCGGGCCGCCCATCCGAATGTCGAGATCCGTTGCGCGACGGCGGTCGGCGA AGACGACGGCGTGCTCGATGCCATCGCACGCTACTGCATCGACCAGCTCGGCCGCAACGCGTAG
Upstream 100 bases:
>100_bases CTCACCGCGGCGACGCCGGGCCTCATCTATCTCGCGCTCGGCCTGTTCGCGCTCAAGTGGGTCGACCGGCACTGAGCGCC GTCACGACGGAGGCTTCGAC
Downstream 100 bases:
>100_bases CCGGATCAGCGGCACCAACAAAAAAGCGCCGGCTTCCGCCAGCGCTCATTCGAATCACCCACCGCGAAGCCGAGCGGCTG CCGCTCGGGAACCGCTACGT
Product: cobalamin (vitamin B12) biosynthesis CbiX protein
Products: NA
Alternate protein names: Sirohydrochlorin Cobaltochelatase; Cobalamin Biosynthesis CbiX; Cobaltochelatase; Cobalamin Biosynthesis Cbix Protein
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MSSHGIVLFGHGARDPRWAEPFERLAARLRGSGAPAPHVSLAFLELMTPSLDTAVAAQVAAGCTRITVVPVFFGQGGHVR RDLPQLVDACRAAHPNVEIRCATAVGEDDGVLDAIARYCIDQLGRNA
Sequences:
>Translated_127_residues MSSHGIVLFGHGARDPRWAEPFERLAARLRGSGAPAPHVSLAFLELMTPSLDTAVAAQVAAGCTRITVVPVFFGQGGHVR RDLPQLVDACRAAHPNVEIRCATAVGEDDGVLDAIARYCIDQLGRNA >Mature_126_residues SSHGIVLFGHGARDPRWAEPFERLAARLRGSGAPAPHVSLAFLELMTPSLDTAVAAQVAAGCTRITVVPVFFGQGGHVRR DLPQLVDACRAAHPNVEIRCATAVGEDDGVLDAIARYCIDQLGRNA
Specific function: Unknown
COG id: COG2138
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13470; Mature: 13338
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSHGIVLFGHGARDPRWAEPFERLAARLRGSGAPAPHVSLAFLELMTPSLDTAVAAQVA CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH AGCTRITVVPVFFGQGGHVRRDLPQLVDACRAAHPNVEIRCATAVGEDDGVLDAIARYCI CCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH DQLGRNA HHHCCCC >Mature Secondary Structure SSHGIVLFGHGARDPRWAEPFERLAARLRGSGAPAPHVSLAFLELMTPSLDTAVAAQVA CCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH AGCTRITVVPVFFGQGGHVRRDLPQLVDACRAAHPNVEIRCATAVGEDDGVLDAIARYCI CCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH DQLGRNA HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA