Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352524

Identifier: 115352524

GI number: 115352524

Start: 2726688

End: 2727224

Strand: Direct

Name: 115352524

Synonym: Bamb_2473

Alternate gene names: NA

Gene position: 2726688-2727224 (Clockwise)

Preceding gene: 115352522

Following gene: 115352525

Centisome position: 76.67

GC content: 67.23

Gene sequence:

>537_bases
ATGAACGATTCCCGACGTCGTGTTCTTTCGGCCATGCTCGCGGCCAGCGTCGCATTCGCGCCCGCGCTGCAGCCCGTCGC
CATTGCGGCAGTCTATTCGAACGGCACCGCTACCGCGCAATTCACCGTCACGCTCACGATCCAGGCCAACTGCACGATCG
CCGCGAACCCGCTCGCGTTCGGCACGGCCGGCGTGCTGGCGTCGGCAGTCAACCAGCAGACCACGGTCTCCGTCACCTGC
ACGAACTCGACGCCGTACAACGTCGGACTCGACGGCGGCACGGTAAGCGGCTCGACGGTCGCCAGCCGGCTGATGGGTGG
CACGACGACCGGCAATACCAGCACGACGGTCGGCTATCAGCTCTACCAGGACTCGGGCCACACGACGATCTGGGGCAACA
CGCAGGGCACCGACACGGTCGGCGGCACCGGCACCGGTTCCGCGCAAGTGCTGAACGTGTACGGTCAGGTGCCCGCGCAA
GCGACGCCGACGCCCGACACCTACCAGGCCTCCGTCACCGCCACCGTGTACTTCTGA

Upstream 100 bases:

>100_bases
GTCTTCCAACAACGACAGAGCGGTTACGGCGACCGGCAACAGACCACGCGGCAGGCACTCCGCGTCCGGACGCCCCCTTG
AACGGCAGGAGACAATCATA

Downstream 100 bases:

>100_bases
CGCGCCATGGCATGGCTCCCGCGCGCATTGGCCGCGCTGTGCGTCGCGTCCGCGTGCGCGGCCGCATCCGCCGCCACGCT
GCAGATCACGCCCGTGACGA

Product: spore coat U domain-containing protein

Products: NA

Alternate protein names: Signal Peptide Protein; Spore Coat U Domain Protein; Spore Coat Protein U Domain-Containing; Spore Coat Protein U; Lipoprotein; Spore Coat Protein U Domain Protein; Protein U; Spore Coat Protein U Family Protein; Secreted Protein-Like

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNDSRRRVLSAMLAASVAFAPALQPVAIAAVYSNGTATAQFTVTLTIQANCTIAANPLAFGTAGVLASAVNQQTTVSVTC
TNSTPYNVGLDGGTVSGSTVASRLMGGTTTGNTSTTVGYQLYQDSGHTTIWGNTQGTDTVGGTGTGSAQVLNVYGQVPAQ
ATPTPDTYQASVTATVYF

Sequences:

>Translated_178_residues
MNDSRRRVLSAMLAASVAFAPALQPVAIAAVYSNGTATAQFTVTLTIQANCTIAANPLAFGTAGVLASAVNQQTTVSVTC
TNSTPYNVGLDGGTVSGSTVASRLMGGTTTGNTSTTVGYQLYQDSGHTTIWGNTQGTDTVGGTGTGSAQVLNVYGQVPAQ
ATPTPDTYQASVTATVYF
>Mature_178_residues
MNDSRRRVLSAMLAASVAFAPALQPVAIAAVYSNGTATAQFTVTLTIQANCTIAANPLAFGTAGVLASAVNQQTTVSVTC
TNSTPYNVGLDGGTVSGSTVASRLMGGTTTGNTSTTVGYQLYQDSGHTTIWGNTQGTDTVGGTGTGSAQVLNVYGQVPAQ
ATPTPDTYQASVTATVYF

Specific function: Unknown

COG id: COG5430

COG function: function code S; Uncharacterized secreted protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17943; Mature: 17943

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSRRRVLSAMLAASVAFAPALQPVAIAAVYSNGTATAQFTVTLTIQANCTIAANPLAF
CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEEEEEECEEEEECCCCC
GTAGVLASAVNQQTTVSVTCTNSTPYNVGLDGGTVSGSTVASRLMGGTTTGNTSTTVGYQ
CHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEE
LYQDSGHTTIWGNTQGTDTVGGTGTGSAQVLNVYGQVPAQATPTPDTYQASVTATVYF
EEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MNDSRRRVLSAMLAASVAFAPALQPVAIAAVYSNGTATAQFTVTLTIQANCTIAANPLAF
CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEEEEEECEEEEECCCCC
GTAGVLASAVNQQTTVSVTCTNSTPYNVGLDGGTVSGSTVASRLMGGTTTGNTSTTVGYQ
CHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEE
LYQDSGHTTIWGNTQGTDTVGGTGTGSAQVLNVYGQVPAQATPTPDTYQASVTATVYF
EEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA