| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352509
Identifier: 115352509
GI number: 115352509
Start: 2705791
End: 2706915
Strand: Direct
Name: 115352509
Synonym: Bamb_2458
Alternate gene names: NA
Gene position: 2705791-2706915 (Clockwise)
Preceding gene: 115352506
Following gene: 115352511
Centisome position: 76.08
GC content: 68.44
Gene sequence:
>1125_bases GTGCCGGCCGACGAATGGAACGCGCTGCTCGAACGCGACGCGCAGCCGACGCCGTTCCTGCGCCACGAATTCCTCGACGC GCTGCACGTCGCGCGCTGCGCGGTCGACGACACCGGCTGGTCGCCGCACTTCGTCACGCTGACCGATCCACGCACGGGGC GGCTCGCGGCCGCCGCGCCCGTCTATGCGAAGCAGCATTCGTACGGCGAATACGTGTTCGACTGGGCATGGGCCGACGCG TACCAGCGTAACGGCCTGTCCTACTACCCGAAGCTGCTGTGCGCGGTGCCGTTCACGCCCGTGCAGGGCACGCGCCTGCT CGCGGCCGACGACGACGCACGTCGCCGGCTCGCGGCCACGCTGCTCGCGTTCGCCGAGCAGAGCGACGTGTCGTCGCTGC ACGTGCTGTTTCCGACCGGCGACGAAGCGCGGCTGCTCGAATCGCTGGGGATGATGCTGCGCGAAGGCGTGCAGTTCCAC TGGCTCAACGACGGCTACCGCGACTTCGACGACTTCCTCGGCACGCTCGAGCAGAAGAAGCGCAAGAACATCCGCGCCGA ACGGCGCAAGGTGCGCGATGCCGGCGTCACGTTCCGGCGGATGACCGGCGATCGGATCACCGATGCCGACTGGCGCTTCT TCTCGCGCTGCTACCGGCAGACCTACCGCGAACACTACTCGAGCCCGTACCTGAATCTCGACTTCTTCCGCGCGATCGGC GCGACGATGCCGGAGAACCTGCTGCTCGTGATCGCCGAAGCCGACGGCCACCCGATCGCGAGCTCGCTCGCCGTCTACCG GCGCGGCGCGAACGGCGGCGGCACGCTGTACGGCCGCTACTGGGGCGCGCTCGAGCACGTGCCCTGCCTGCATTTCGAAA CGGCGTACTACCAGCTGCTCGAATTCTGCATCGAGGCCGGGCTCGACACGTTCGAGGGCGGCGCGCAGGGCGAGCACAAG CTCGCGCGCGGCTTCCTGCCGACCGTCACGCATTCCGCGCACTGGCTCGCGCATCCGGCATTCTCCGATGCGGTCGCGCA TTTTCTCGCACGCGAGACCGAGCATATCCACGCGTACGTCGACGAACTCCGCGAACACGATCCGTTCCGGCGCAGCACCG GCTAG
Upstream 100 bases:
>100_bases CCATGGCGGCACGCATCCGGCGGCATCCAACAGTACGGGTTCACGCTTGAAACACGAACGCATCGATTATCGCACGGGCA TCCTGTCGTCCCCCGCGGAA
Downstream 100 bases:
>100_bases CGTCATTCTGCATACCGGCATGCGGCGAGGCCGCGCATGGCCTCGCCGCATGCCGCACGACCGCGGCCGGCTCAGTGCGC GGCGAGCGTCACCGTCTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MPADEWNALLERDAQPTPFLRHEFLDALHVARCAVDDTGWSPHFVTLTDPRTGRLAAAAPVYAKQHSYGEYVFDWAWADA YQRNGLSYYPKLLCAVPFTPVQGTRLLAADDDARRRLAATLLAFAEQSDVSSLHVLFPTGDEARLLESLGMMLREGVQFH WLNDGYRDFDDFLGTLEQKKRKNIRAERRKVRDAGVTFRRMTGDRITDADWRFFSRCYRQTYREHYSSPYLNLDFFRAIG ATMPENLLLVIAEADGHPIASSLAVYRRGANGGGTLYGRYWGALEHVPCLHFETAYYQLLEFCIEAGLDTFEGGAQGEHK LARGFLPTVTHSAHWLAHPAFSDAVAHFLARETEHIHAYVDELREHDPFRRSTG
Sequences:
>Translated_374_residues MPADEWNALLERDAQPTPFLRHEFLDALHVARCAVDDTGWSPHFVTLTDPRTGRLAAAAPVYAKQHSYGEYVFDWAWADA YQRNGLSYYPKLLCAVPFTPVQGTRLLAADDDARRRLAATLLAFAEQSDVSSLHVLFPTGDEARLLESLGMMLREGVQFH WLNDGYRDFDDFLGTLEQKKRKNIRAERRKVRDAGVTFRRMTGDRITDADWRFFSRCYRQTYREHYSSPYLNLDFFRAIG ATMPENLLLVIAEADGHPIASSLAVYRRGANGGGTLYGRYWGALEHVPCLHFETAYYQLLEFCIEAGLDTFEGGAQGEHK LARGFLPTVTHSAHWLAHPAFSDAVAHFLARETEHIHAYVDELREHDPFRRSTG >Mature_373_residues PADEWNALLERDAQPTPFLRHEFLDALHVARCAVDDTGWSPHFVTLTDPRTGRLAAAAPVYAKQHSYGEYVFDWAWADAY QRNGLSYYPKLLCAVPFTPVQGTRLLAADDDARRRLAATLLAFAEQSDVSSLHVLFPTGDEARLLESLGMMLREGVQFHW LNDGYRDFDDFLGTLEQKKRKNIRAERRKVRDAGVTFRRMTGDRITDADWRFFSRCYRQTYREHYSSPYLNLDFFRAIGA TMPENLLLVIAEADGHPIASSLAVYRRGANGGGTLYGRYWGALEHVPCLHFETAYYQLLEFCIEAGLDTFEGGAQGEHKL ARGFLPTVTHSAHWLAHPAFSDAVAHFLARETEHIHAYVDELREHDPFRRSTG
Specific function: Unknown
COG id: COG3146
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42604; Mature: 42473
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPADEWNALLERDAQPTPFLRHEFLDALHVARCAVDDTGWSPHFVTLTDPRTGRLAAAAP CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEECCC VYAKQHSYGEYVFDWAWADAYQRNGLSYYPKLLCAVPFTPVQGTRLLAADDDARRRLAAT HHHHHCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHH LLAFAEQSDVSSLHVLFPTGDEARLLESLGMMLREGVQFHWLNDGYRDFDDFLGTLEQKK HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHH RKNIRAERRKVRDAGVTFRRMTGDRITDADWRFFSRCYRQTYREHYSSPYLNLDFFRAIG HHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC ATMPENLLLVIAEADGHPIASSLAVYRRGANGGGTLYGRYWGALEHVPCLHFETAYYQLL CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHH EFCIEAGLDTFEGGAQGEHKLARGFLPTVTHSAHWLAHPAFSDAVAHFLARETEHIHAYV HHHHHCCCCCCCCCCCCHHHHHHCCCHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH DELREHDPFRRSTG HHHHHCCCCCCCCC >Mature Secondary Structure PADEWNALLERDAQPTPFLRHEFLDALHVARCAVDDTGWSPHFVTLTDPRTGRLAAAAP CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEECCC VYAKQHSYGEYVFDWAWADAYQRNGLSYYPKLLCAVPFTPVQGTRLLAADDDARRRLAAT HHHHHCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHH LLAFAEQSDVSSLHVLFPTGDEARLLESLGMMLREGVQFHWLNDGYRDFDDFLGTLEQKK HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHH RKNIRAERRKVRDAGVTFRRMTGDRITDADWRFFSRCYRQTYREHYSSPYLNLDFFRAIG HHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC ATMPENLLLVIAEADGHPIASSLAVYRRGANGGGTLYGRYWGALEHVPCLHFETAYYQLL CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHH EFCIEAGLDTFEGGAQGEHKLARGFLPTVTHSAHWLAHPAFSDAVAHFLARETEHIHAYV HHHHHCCCCCCCCCCCCHHHHHHCCCHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH DELREHDPFRRSTG HHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA