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The map label for this gene is fumB [H]

Identifier: 115352284

GI number: 115352284

Start: 2467096

End: 2468619

Strand: Direct

Name: fumB [H]

Synonym: Bamb_2233

Alternate gene names: 115352284

Gene position: 2467096-2468619 (Clockwise)

Preceding gene: 115352283

Following gene: 115352285

Centisome position: 69.37

GC content: 65.88

Gene sequence:

>1524_bases
ATGACCGTCATCAAACAGGAAGACCTGATCCAGAGCATCGCGGATTCGCTGCAGTACATCAGCTACTACCACCCGCTCGA
CTACATCCAGGCCCTCGGCCGCGCGTACGAGCTGGAAGAGAGCCCGGCCGCGAAGGACGCGATCGCGCAGATCCTCACGA
ACAGCCGCATGTGCGCGGAAGGCCGCCGCCCGATCTGCCAGGACACCGGCATCGTCACGATCTTCGTGAAGGTCGGCATG
GACGTGCGCTGGGACGGCGCGACAATGGGCCTCACAGACATGATCAACGAAGGCGTGCGCCGCGGTTACACGCACCCGGA
CAACGTGCTGCGCGCATCGATCGTCAACCCGCCGGAAGGCGCGCGCAAGAACACGAAGGACAACACCCCGGCCGTGATCC
ACTACGAGATCGTGCCGGGCGACAAGGTCGACGTGCAGGTCGCGGCGAAGGGCGGCGGCTCGGAGAACAAGTCGAAGTTC
GTGATGCTGAACCCGTCGGATTCGATCGTCGACTGGGTGCTGAAGACGGTCCCGACGATGGGCGCCGGCTGGTGCCCGCC
GGGCATGCTCGGGATCGGCATCGGCGGCACCGCTGAAAAGGCGATGCTGATGGCGAAGGAATCGCTGATGGAGCCGATCG
ACATTCAGGAAATCATCGCGCGCGGTCCGAAGGACTGGGTCGAGGAACTGCGCGTCGAGCTGCACGAGAAAGTCAACGCG
CTCGGCATCGGCGCGCAAGGCCTCGGCGGCCTCGCGACCGTGCTCGACGTGAAGATCATGGCCGCTCCGACGCACGCGGC
GTCGAAGCCGGTCGCGCTGATCCCGAACTGCGCGGCCACGCGCCACGCGCACTTCGTGCTCGACGGCTCGGGTCCGGCCA
AGCTTGAAGCGCCGTCGCTCGACGCCTGGCCGAAGGTCCAGTGGGAACCGAACACCGAAACCAGCAAGCGCGTCGACCTG
AACACGCTGACGCCGGAAGAAGTCGCGAGCTGGGCGCCGGGCCAGACGCTGCTGCTGTCGGGCAAGATGCTCACGGGCCG
CGACGCCGCGCACAAGCGCATCGCCGACATGCTCGCGAAGGGCGAGAAGCTGCCGGTCGACTTCACGAACCGCGTGATCT
ACTACGTGGGTCCGGTCGATCCGGTGCGTGACGAGGTGGTCGGCCCGGCAGGCCCGACGACGGCCACGCGGATGGACAAG
TTCACCGAGACGATGCTCGCTCAGACGGGTCTGATCTCGATGGTCGGCAAGGCCGAACGCGGCCCGGTCGCGATCGATGC
GATCAAGAAGCACAAGGCGGCCTACCTGATGGCGGTCGGCGGTGCGGCGTACCTCGTGTCGAAGGCGATCCGCGGCGCGA
AGGTGCTCGCATTCGAAGATCTCGGCATGGAAGCGATCTACGAGTTCGACGTGCAGGACATGCCGGTGACGGTGGCCGTC
GATTCGTCGGGCACGTCGGTGCACCAGACCGGTCCGAAGGAGTGGCAGGCAAAGATCGGCAAGATCCCGGTCGCAACCGC
TTAA

Upstream 100 bases:

>100_bases
CACGAGACGCACGCGCCGGCAGCGAACGAGTCCCGCAAGCCGGCCGAAGCAGCCGTCAACGCATAAACGCATTCCCCACT
GTCCCCACAGAGTCTCAGCC

Downstream 100 bases:

>100_bases
GCGCGATCGAACGAAAGGCCGGACAAGCGTCCGGCCTTTTTACTTCCCATTCTCATTCTCGCGCGCGGCCGGTTACGCAA
GGCTGATTCTCATTACACGC

Product: tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha

Products: NA

Alternate protein names: Fumarase [H]

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MTVIKQEDLIQSIADSLQYISYYHPLDYIQALGRAYELEESPAAKDAIAQILTNSRMCAEGRRPICQDTGIVTIFVKVGM
DVRWDGATMGLTDMINEGVRRGYTHPDNVLRASIVNPPEGARKNTKDNTPAVIHYEIVPGDKVDVQVAAKGGGSENKSKF
VMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAMLMAKESLMEPIDIQEIIARGPKDWVEELRVELHEKVNA
LGIGAQGLGGLATVLDVKIMAAPTHAASKPVALIPNCAATRHAHFVLDGSGPAKLEAPSLDAWPKVQWEPNTETSKRVDL
NTLTPEEVASWAPGQTLLLSGKMLTGRDAAHKRIADMLAKGEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDK
FTETMLAQTGLISMVGKAERGPVAIDAIKKHKAAYLMAVGGAAYLVSKAIRGAKVLAFEDLGMEAIYEFDVQDMPVTVAV
DSSGTSVHQTGPKEWQAKIGKIPVATA

Sequences:

>Translated_507_residues
MTVIKQEDLIQSIADSLQYISYYHPLDYIQALGRAYELEESPAAKDAIAQILTNSRMCAEGRRPICQDTGIVTIFVKVGM
DVRWDGATMGLTDMINEGVRRGYTHPDNVLRASIVNPPEGARKNTKDNTPAVIHYEIVPGDKVDVQVAAKGGGSENKSKF
VMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAMLMAKESLMEPIDIQEIIARGPKDWVEELRVELHEKVNA
LGIGAQGLGGLATVLDVKIMAAPTHAASKPVALIPNCAATRHAHFVLDGSGPAKLEAPSLDAWPKVQWEPNTETSKRVDL
NTLTPEEVASWAPGQTLLLSGKMLTGRDAAHKRIADMLAKGEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDK
FTETMLAQTGLISMVGKAERGPVAIDAIKKHKAAYLMAVGGAAYLVSKAIRGAKVLAFEDLGMEAIYEFDVQDMPVTVAV
DSSGTSVHQTGPKEWQAKIGKIPVATA
>Mature_506_residues
TVIKQEDLIQSIADSLQYISYYHPLDYIQALGRAYELEESPAAKDAIAQILTNSRMCAEGRRPICQDTGIVTIFVKVGMD
VRWDGATMGLTDMINEGVRRGYTHPDNVLRASIVNPPEGARKNTKDNTPAVIHYEIVPGDKVDVQVAAKGGGSENKSKFV
MLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAMLMAKESLMEPIDIQEIIARGPKDWVEELRVELHEKVNAL
GIGAQGLGGLATVLDVKIMAAPTHAASKPVALIPNCAATRHAHFVLDGSGPAKLEAPSLDAWPKVQWEPNTETSKRVDLN
TLTPEEVASWAPGQTLLLSGKMLTGRDAAHKRIADMLAKGEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKF
TETMLAQTGLISMVGKAERGPVAIDAIKKHKAAYLMAVGGAAYLVSKAIRGAKVLAFEDLGMEAIYEFDVQDMPVTVAVD
SSGTSVHQTGPKEWQAKIGKIPVATA

Specific function: It functions in the generation of fumarate for use as an anaerobic electron acceptor [H]

COG id: COG1951

COG function: function code C; Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I fumarase family [H]

Homologues:

Organism=Escherichia coli, GI1787897, Length=468, Percent_Identity=33.1196581196581, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1790564, Length=467, Percent_Identity=31.6916488222698, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI1789442, Length=283, Percent_Identity=28.2685512367491, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789443, Length=179, Percent_Identity=27.3743016759777, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004646
- InterPro:   IPR004647
- InterPro:   IPR011167
- InterPro:   IPR020557 [H]

Pfam domain/function: PF05681 Fumerase; PF05683 Fumerase_C [H]

EC number: =4.2.1.2 [H]

Molecular weight: Translated: 54435; Mature: 54304

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVIKQEDLIQSIADSLQYISYYHPLDYIQALGRAYELEESPAAKDAIAQILTNSRMCAE
CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCHHHC
GRRPICQDTGIVTIFVKVGMDVRWDGATMGLTDMINEGVRRGYTHPDNVLRASIVNPPEG
CCCCCCCCCCEEEEEEEECCEEEECCCCCCHHHHHHHHHHCCCCCCCHHHEEECCCCCCC
ARKNTKDNTPAVIHYEIVPGDKVDVQVAAKGGGSENKSKFVMLNPSDSIVDWVLKTVPTM
CCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
GAGWCPPGMLGIGIGGTAEKAMLMAKESLMEPIDIQEIIARGPKDWVEELRVELHEKVNA
CCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
LGIGAQGLGGLATVLDVKIMAAPTHAASKPVALIPNCAATRHAHFVLDGSGPAKLEAPSL
EECCCCCCCHHHHHHEEEEEECCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEECCCCC
DAWPKVQWEPNTETSKRVDLNTLTPEEVASWAPGQTLLLSGKMLTGRDAAHKRIADMLAK
CCCCCEEECCCCCCCCEEEECCCCHHHHHCCCCCCEEEEECCEECCCHHHHHHHHHHHHC
GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTETMLAQTGLISMVGKAER
CCCCCEEECCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
GPVAIDAIKKHKAAYLMAVGGAAYLVSKAIRGAKVLAFEDLGMEAIYEFDVQDMPVTVAV
CCEEHHHHHHCCEEEEEEECHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCEEEEE
DSSGTSVHQTGPKEWQAKIGKIPVATA
CCCCCCCCCCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TVIKQEDLIQSIADSLQYISYYHPLDYIQALGRAYELEESPAAKDAIAQILTNSRMCAE
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCHHHC
GRRPICQDTGIVTIFVKVGMDVRWDGATMGLTDMINEGVRRGYTHPDNVLRASIVNPPEG
CCCCCCCCCCEEEEEEEECCEEEECCCCCCHHHHHHHHHHCCCCCCCHHHEEECCCCCCC
ARKNTKDNTPAVIHYEIVPGDKVDVQVAAKGGGSENKSKFVMLNPSDSIVDWVLKTVPTM
CCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
GAGWCPPGMLGIGIGGTAEKAMLMAKESLMEPIDIQEIIARGPKDWVEELRVELHEKVNA
CCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
LGIGAQGLGGLATVLDVKIMAAPTHAASKPVALIPNCAATRHAHFVLDGSGPAKLEAPSL
EECCCCCCCHHHHHHEEEEEECCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEECCCCC
DAWPKVQWEPNTETSKRVDLNTLTPEEVASWAPGQTLLLSGKMLTGRDAAHKRIADMLAK
CCCCCEEECCCCCCCCEEEECCCCHHHHHCCCCCCEEEEECCEECCCHHHHHHHHHHHHC
GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTETMLAQTGLISMVGKAER
CCCCCEEECCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
GPVAIDAIKKHKAAYLMAVGGAAYLVSKAIRGAKVLAFEDLGMEAIYEFDVQDMPVTVAV
CCEEHHHHHHCCEEEEEEECHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCEEEEE
DSSGTSVHQTGPKEWQAKIGKIPVATA
CCCCCCCCCCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2656658; 7610040; 9278503 [H]