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The map label for this gene is arpC [H]

Identifier: 115352149

GI number: 115352149

Start: 2306513

End: 2307928

Strand: Direct

Name: arpC [H]

Synonym: Bamb_2098

Alternate gene names: 115352149

Gene position: 2306513-2307928 (Clockwise)

Preceding gene: 115352148

Following gene: 115352150

Centisome position: 64.85

GC content: 72.53

Gene sequence:

>1416_bases
ATGGCTGACCGTACGCTCGCTGCATGGCTCGGCAGCGTCGCGCTGCTCGCCGGCTGTTCGTTCGCGCCGACGTATCACGC
GCCGGCCGTGCCGGTGCCGGCCGCGTTTCGCGAAACCGGCCCGTGGGTCGATGCCGCCCCGGCCGATCGCCTGCCGCGCG
ACGGCTGGTGGCGCGTGTACGGCGACGCGACACTCGACCGGCTCGAGCCGCTCGTCGCACGCGCGAATCCGGACCTCGCC
GCCGCCGTCGCACGGCACGACGAAGCGGCCGCATTGTTCGACGAGGCGCACGCCGCGTTGCTGCCGACCATCGGCATCGG
CGCCGAGACCGACCGCGACCGGCAGTCCGCGCGCCGGCCGCTGCGCGGCAGCGGACAGCCCGACGTCTACGAATCGAACA
CGCTCGACGCCGGCCTCGGTTACGACATCGATCTGTGGGGCAAGGTCCGCAACACGGTCGCTGCCGGCCGCGACAACGCG
CAAGCCGCGGCCGATGATCTCGCATCCGTGCGGCTCAGCCTGCAGGCCCGCGTCGCCAGCACCTACTTCGACCTCGCGGG
ACTCGATCGCGAAGCGGACTCGCTCGCGCAGACGATCGATGCGTATCGCCGTGCGTGGCAACTGACGGTCAGCCGCCATC
GCGGCGGCCTCGCATCGGGGCTCGACGTGTCGCGCGCGCAAACGCAGCTCGCGCTCGCGCAGGCGCGCGCATCCGACATC
GCCGCGCGCCGTGCGCTCGACGAGCATGCGATCGCCGTGCTCGTCGGCGTATCCGCGTCGACGTTCTCGCTGCCGGCCGC
CGCCGCGCTGCCCGCCGTGCCGTCGATTCCGACCGGGCTCGCGTCGACGCTGCTCGAACGCCGTCCGGACATCGCCGCCG
CCGAACGCCGCGTCGCGGCCGCGAACGCACGGATCGGCGTCGCGCGCGCCGCGTACTTCCCTGACCTGTCGCTCGGCCTC
GACGCGGGCTTCCAGAGCGACACGTTCTCGCCGTGGCTCGCCGCACCGAACGAAATCTGGTCGATCGGGCCGCGCCTCGC
GACGACACTGTTCGACGGCGGCCTGCGTGCGGCGGGTGTACGCCACGCGCGCGCGCAGTTCGCCGAACAGGGCGCACGTT
ACCGAAGCGTCGTACTGGCGGCGTTCCGCGAAGTCGAGGACGATCTCGCGCTGCTGCACCGGCTCGGAGACGAATCGGCC
CAGGACGACGCGGCGCTCGTCGCGGCGCAGCAGTCGCTTGCGCTTGCAATGTCGCGCTATCGCGACGGCGCCGTCAGCTA
TCTCGACGTGGTCACCGCGCAGACCACCGAGCTCGATACGCAGATCGCGTCGCTCGACGTCGATGCCCGACGCCTGCAGG
CGTCCGTCGCGCTCGTACGCGCGCTCGGCGGCGGCTGGCGCGACGCGCGTTCATGA

Upstream 100 bases:

>100_bases
GGGCTCGCGGCGAGCGACCGCGTGATCGACAATCCGCCCGATTCGCTCGCGGACGGCGACCCGGTGCGCATCGCCGGCAC
CGCGACGAAGGAGCCTGCGC

Downstream 100 bases:

>100_bases
ACGTTTCTTCATCGGCGCGCCCGGTGCTCGACGCAGCGCGCCCGATAACGTGTGACCTGCCGGCTACGCATTCGCGGCGC
CGGTCTCCGCCCTTCGCAAA

Product: RND efflux system outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MADRTLAAWLGSVALLAGCSFAPTYHAPAVPVPAAFRETGPWVDAAPADRLPRDGWWRVYGDATLDRLEPLVARANPDLA
AAVARHDEAAALFDEAHAALLPTIGIGAETDRDRQSARRPLRGSGQPDVYESNTLDAGLGYDIDLWGKVRNTVAAGRDNA
QAAADDLASVRLSLQARVASTYFDLAGLDREADSLAQTIDAYRRAWQLTVSRHRGGLASGLDVSRAQTQLALAQARASDI
AARRALDEHAIAVLVGVSASTFSLPAAAALPAVPSIPTGLASTLLERRPDIAAAERRVAAANARIGVARAAYFPDLSLGL
DAGFQSDTFSPWLAAPNEIWSIGPRLATTLFDGGLRAAGVRHARAQFAEQGARYRSVVLAAFREVEDDLALLHRLGDESA
QDDAALVAAQQSLALAMSRYRDGAVSYLDVVTAQTTELDTQIASLDVDARRLQASVALVRALGGGWRDARS

Sequences:

>Translated_471_residues
MADRTLAAWLGSVALLAGCSFAPTYHAPAVPVPAAFRETGPWVDAAPADRLPRDGWWRVYGDATLDRLEPLVARANPDLA
AAVARHDEAAALFDEAHAALLPTIGIGAETDRDRQSARRPLRGSGQPDVYESNTLDAGLGYDIDLWGKVRNTVAAGRDNA
QAAADDLASVRLSLQARVASTYFDLAGLDREADSLAQTIDAYRRAWQLTVSRHRGGLASGLDVSRAQTQLALAQARASDI
AARRALDEHAIAVLVGVSASTFSLPAAAALPAVPSIPTGLASTLLERRPDIAAAERRVAAANARIGVARAAYFPDLSLGL
DAGFQSDTFSPWLAAPNEIWSIGPRLATTLFDGGLRAAGVRHARAQFAEQGARYRSVVLAAFREVEDDLALLHRLGDESA
QDDAALVAAQQSLALAMSRYRDGAVSYLDVVTAQTTELDTQIASLDVDARRLQASVALVRALGGGWRDARS
>Mature_470_residues
ADRTLAAWLGSVALLAGCSFAPTYHAPAVPVPAAFRETGPWVDAAPADRLPRDGWWRVYGDATLDRLEPLVARANPDLAA
AVARHDEAAALFDEAHAALLPTIGIGAETDRDRQSARRPLRGSGQPDVYESNTLDAGLGYDIDLWGKVRNTVAAGRDNAQ
AAADDLASVRLSLQARVASTYFDLAGLDREADSLAQTIDAYRRAWQLTVSRHRGGLASGLDVSRAQTQLALAQARASDIA
ARRALDEHAIAVLVGVSASTFSLPAAAALPAVPSIPTGLASTLLERRPDIAAAERRVAAANARIGVARAAYFPDLSLGLD
AGFQSDTFSPWLAAPNEIWSIGPRLATTLFDGGLRAAGVRHARAQFAEQGARYRSVVLAAFREVEDDLALLHRLGDESAQ
DDAALVAAQQSLALAMSRYRDGAVSYLDVVTAQTTELDTQIASLDVDARRLQASVALVRALGGGWRDARS

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=470, Percent_Identity=30.4255319148936, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI2367348, Length=488, Percent_Identity=28.4836065573771, Blast_Score=122, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 49908; Mature: 49777

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRTLAAWLGSVALLAGCSFAPTYHAPAVPVPAAFRETGPWVDAAPADRLPRDGWWRVY
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEE
GDATLDRLEPLVARANPDLAAAVARHDEAAALFDEAHAALLPTIGIGAETDRDRQSARRP
CCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCC
LRGSGQPDVYESNTLDAGLGYDIDLWGKVRNTVAAGRDNAQAAADDLASVRLSLQARVAS
CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
TYFDLAGLDREADSLAQTIDAYRRAWQLTVSRHRGGLASGLDVSRAQTQLALAQARASDI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
AARRALDEHAIAVLVGVSASTFSLPAAAALPAVPSIPTGLASTLLERRPDIAAAERRVAA
HHHHHHHHHHEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
ANARIGVARAAYFPDLSLGLDAGFQSDTFSPWLAAPNEIWSIGPRLATTLFDGGLRAAGV
HCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHCCCHHHHHH
RHARAQFAEQGARYRSVVLAAFREVEDDLALLHRLGDESAQDDAALVAAQQSLALAMSRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
RDGAVSYLDVVTAQTTELDTQIASLDVDARRLQASVALVRALGGGWRDARS
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ADRTLAAWLGSVALLAGCSFAPTYHAPAVPVPAAFRETGPWVDAAPADRLPRDGWWRVY
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEE
GDATLDRLEPLVARANPDLAAAVARHDEAAALFDEAHAALLPTIGIGAETDRDRQSARRP
CCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCC
LRGSGQPDVYESNTLDAGLGYDIDLWGKVRNTVAAGRDNAQAAADDLASVRLSLQARVAS
CCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
TYFDLAGLDREADSLAQTIDAYRRAWQLTVSRHRGGLASGLDVSRAQTQLALAQARASDI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
AARRALDEHAIAVLVGVSASTFSLPAAAALPAVPSIPTGLASTLLERRPDIAAAERRVAA
HHHHHHHHHHEEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
ANARIGVARAAYFPDLSLGLDAGFQSDTFSPWLAAPNEIWSIGPRLATTLFDGGLRAAGV
HCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHCCCHHHHHH
RHARAQFAEQGARYRSVVLAAFREVEDDLALLHRLGDESAQDDAALVAAQQSLALAMSRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
RDGAVSYLDVVTAQTTELDTQIASLDVDARRLQASVALVRALGGGWRDARS
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]