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The map label for this gene is trbF [H]

Identifier: 115352062

GI number: 115352062

Start: 2207295

End: 2207999

Strand: Direct

Name: trbF [H]

Synonym: Bamb_2011

Alternate gene names: 115352062

Gene position: 2207295-2207999 (Clockwise)

Preceding gene: 115352061

Following gene: 115352063

Centisome position: 62.06

GC content: 64.82

Gene sequence:

>705_bases
ATGCGATTTAAACGACCGCAGGTGCGCTATGCCGATACGCCGCAGCCTGCCACCCCATATCAAGCTGCCGCCCAAGTGTG
GGACGAGCGCATCGGCTCGGCCCGCGTACAGGCGAAGAACTGGCGGCTGATGGCCTTTGGCTGCCTAGTGCTGGCCTTGC
TGATGGCCGGCGGCCTGGTGTGGCGTTCGGCGCAGTCCATCGTGACGCCCTACGTCATTGAAGTCGATCAGTCCGGCCAG
GTGCGTACCGTGGGCGAAGCCGCTACGCCGTACCGGCCCGCCGATGCGCAGATCGCGCATCACCTGGCGCGCTTCGTGAC
GCTGGTGCGTTCGCTGTCCATCGACCCCATCGTCGTGCGGCAGAACTGGCTCGATGCCTATGACTACACCACCGACAAGG
GCGCGGCCGTGCTCAACGACTACGCGAGCAAGAACGATCCGTTCGCCCGCGTCGGCCGCGAGTCGGTGACGGTGCAGATC
ACCAGCGTCACGCGCGCGAGCGATGCCTCGTTCAACGTCCGCTGGACGGAGCAGCGGTTCGTCAATGGCGTACCCGCTGG
CACCGAACGCTGGAATGCCGTGCTTTCCATCGTCCTGCAAACCCCGCGTACCGAACAGCGCCTGCGCAAGAACCCGCTGG
GGATCTACGTCAACGGCCTGTCGTGGAGTCGCGAACTGGATTCTTCCGAAGGAGCCAAGCCATGA

Upstream 100 bases:

>100_bases
TGCCGCACACACGTTGCGCGGTGGCGATGGCGGCGGCTCCGGGCAAGGCCCGAGCCTGCGCGGCTCCGACGACTAAAGCG
ATTCACAAGGAGAACTGACC

Downstream 100 bases:

>100_bases
ACTTGCCTTTCCGCTTTTACGCTTTCGTGCTGATGTTCGCGGCCATCACGTCGTCATTGCTGGGCTGCGCCTCGCAGGGC
AAGCCGCCGCCGTCCATCTC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQSGQ
VRTVGEAATPYRPADAQIAHHLARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYASKNDPFARVGRESVTVQI
TSVTRASDASFNVRWTEQRFVNGVPAGTERWNAVLSIVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP

Sequences:

>Translated_234_residues
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQSGQ
VRTVGEAATPYRPADAQIAHHLARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYASKNDPFARVGRESVTVQI
TSVTRASDASFNVRWTEQRFVNGVPAGTERWNAVLSIVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP
>Mature_234_residues
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLVWRSAQSIVTPYVIEVDQSGQ
VRTVGEAATPYRPADAQIAHHLARFVTLVRSLSIDPIVVRQNWLDAYDYTTDKGAAVLNDYASKNDPFARVGRESVTVQI
TSVTRASDASFNVRWTEQRFVNGVPAGTERWNAVLSIVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26104; Mature: 26104

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCHH
WRSAQSIVTPYVIEVDQSGQVRTVGEAATPYRPADAQIAHHLARFVTLVRSLSIDPIVVR
HHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDKGAAVLNDYASKNDPFARVGRESVTVQITSVTRASDASFNVRWTEQRF
CCCCCHHCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEEEEEEEEECCCCCEEEEECHHHH
VNGVPAGTERWNAVLSIVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP
HCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFKRPQVRYADTPQPATPYQAAAQVWDERIGSARVQAKNWRLMAFGCLVLALLMAGGLV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCHH
WRSAQSIVTPYVIEVDQSGQVRTVGEAATPYRPADAQIAHHLARFVTLVRSLSIDPIVVR
HHHHHHHCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
QNWLDAYDYTTDKGAAVLNDYASKNDPFARVGRESVTVQITSVTRASDASFNVRWTEQRF
CCCCCHHCCCCCCCHHHHHHHHCCCCCHHHCCCCEEEEEEEEEEECCCCCEEEEECHHHH
VNGVPAGTERWNAVLSIVLQTPRTEQRLRKNPLGIYVNGLSWSRELDSSEGAKP
HCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]