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The map label for this gene is trbB [H]

Identifier: 115352055

GI number: 115352055

Start: 2200631

End: 2201677

Strand: Direct

Name: trbB [H]

Synonym: Bamb_2004

Alternate gene names: 115352055

Gene position: 2200631-2201677 (Clockwise)

Preceding gene: 115352054

Following gene: 115352056

Centisome position: 61.88

GC content: 69.63

Gene sequence:

>1047_bases
ATGAGCGCCGTTCCACAGATCCCGCCAGAACCACGCTCGTCGGCCACCACTTCACAGAATCGCCGCATCCAGATGCTGCG
CACGGCAATGGGGCCGCTGATCGCCGCCGCGCTCGAAGACCCGGACGTGGTGGAAATCATGCTCAACCCCGACCGCAGCC
TATGGGTCGATCGGCTGTCGTCGGGCCGTGCGCCGCTGGGCGTCGAACTGCCCGAGGCCGATGGCGAACGCATCATTCGC
CTGGTGGCCGCCCACGTCGGTGCAGAGGTGCATCGCGGCCGACCATTGCTGACCGCCGAGCTGCCCGAAACCGGCGAGCG
GTTCGAGGGCATCCTGCCCCCGGCCGCACCCGGCCCGGCCTTCGCGCTGCGCAAGCGCGCCGTGAGCATCATCGGCCTGG
ATCGCTACGTCGCCGACGGCATCCTGACTGCCGGCCAGGCCGACTTCCTGCGCCGCGCCGTGCGCGAGCGCCAGAACATC
CTGATCGCCGGCGGCACCAGTACCGGCAAGACCACGCTCGCCAACGCGCTGCTGGCCGAGATCGCCGCCACCGGTGACCG
CGTGCTGGTGCTCGAAGACACCATCGAGCTGCAATGCGCCGCCCGCGACCATGTGCCGCTGCGCACGCGCGCGGGCGTGG
TGTCGATGCAGGAGCTGGTGCGCGCCACGATGCGCCTGCGCCCCGACCGCGTGATCGTCGGCGAGGTGCGCGGCGGCGAG
GCGCTTGATCTCATCAAGGTGTGGGGCACCGGCCACCCCGGCGGCATCGCCACGATTCACGCCGGTTCCGCCTTGGGCGC
GCTGCTGCGCCTGGAGCAACTGATTCTCGAAGTGGCGGTGAATCCGCCGCGCGCGTTGATCGCCGAGGCCATCAACGTCG
TCATCCACATCGCCGGGCGTGGCCGCAAGCGCCACGTCGAAAGCATCGCACGCGTCGTCGGTTTCGACGGCGCGGGCTAT
CGCATGGCGGATGCGCTGGAAATGCCGTTTCCCGAGCTGCCGCCAGTTCCTTCCCCGTCCCCTGAACCCTCTGGAGAACT
GCCATGA

Upstream 100 bases:

>100_bases
TGGTGCGCGACGTGGTGGAAGAACTGCACCCGGACCCGATGCGGATGGATGACGCGGCGGCGGTGGCCGAAGCCCATGAA
CGTGCTGCGGAGCGTGCCTC

Downstream 100 bases:

>100_bases
CGCAGATGCACATTCATGCTTTCCGCATTTCCGTAAATCCGGCTTCGGCCTTCGCACGCCTGCGTCGCCTGGCCGCGCCG
GCGCAGCACGGCCTGATGCT

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSAVPQIPPEPRSSATTSQNRRIQMLRTAMGPLIAAALEDPDVVEIMLNPDRSLWVDRLSSGRAPLGVELPEADGERIIR
LVAAHVGAEVHRGRPLLTAELPETGERFEGILPPAAPGPAFALRKRAVSIIGLDRYVADGILTAGQADFLRRAVRERQNI
LIAGGTSTGKTTLANALLAEIAATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMQELVRATMRLRPDRVIVGEVRGGE
ALDLIKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAINVVIHIAGRGRKRHVESIARVVGFDGAGY
RMADALEMPFPELPPVPSPSPEPSGELP

Sequences:

>Translated_348_residues
MSAVPQIPPEPRSSATTSQNRRIQMLRTAMGPLIAAALEDPDVVEIMLNPDRSLWVDRLSSGRAPLGVELPEADGERIIR
LVAAHVGAEVHRGRPLLTAELPETGERFEGILPPAAPGPAFALRKRAVSIIGLDRYVADGILTAGQADFLRRAVRERQNI
LIAGGTSTGKTTLANALLAEIAATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMQELVRATMRLRPDRVIVGEVRGGE
ALDLIKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAINVVIHIAGRGRKRHVESIARVVGFDGAGY
RMADALEMPFPELPPVPSPSPEPSGELP
>Mature_347_residues
SAVPQIPPEPRSSATTSQNRRIQMLRTAMGPLIAAALEDPDVVEIMLNPDRSLWVDRLSSGRAPLGVELPEADGERIIRL
VAAHVGAEVHRGRPLLTAELPETGERFEGILPPAAPGPAFALRKRAVSIIGLDRYVADGILTAGQADFLRRAVRERQNIL
IAGGTSTGKTTLANALLAEIAATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMQELVRATMRLRPDRVIVGEVRGGEA
LDLIKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAINVVIHIAGRGRKRHVESIARVVGFDGAGYR
MADALEMPFPELPPVPSPSPEPSGELP

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=150, Percent_Identity=29.3333333333333, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 37107; Mature: 36975

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVPQIPPEPRSSATTSQNRRIQMLRTAMGPLIAAALEDPDVVEIMLNPDRSLWVDRLS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
SGRAPLGVELPEADGERIIRLVAAHVGAEVHRGRPLLTAELPETGERFEGILPPAAPGPA
CCCCCCEEECCCCCHHHHHHHHHHHHCHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCHH
FALRKRAVSIIGLDRYVADGILTAGQADFLRRAVRERQNILIAGGTSTGKTTLANALLAE
HHHHHHHHHHEEHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
IAATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMQELVRATMRLRPDRVIVGEVRGGE
HHCCCCEEEEEECCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
ALDLIKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAINVVIHIAGR
EEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCC
GRKRHVESIARVVGFDGAGYRMADALEMPFPELPPVPSPSPEPSGELP
CCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAVPQIPPEPRSSATTSQNRRIQMLRTAMGPLIAAALEDPDVVEIMLNPDRSLWVDRLS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
SGRAPLGVELPEADGERIIRLVAAHVGAEVHRGRPLLTAELPETGERFEGILPPAAPGPA
CCCCCCEEECCCCCHHHHHHHHHHHHCHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCHH
FALRKRAVSIIGLDRYVADGILTAGQADFLRRAVRERQNILIAGGTSTGKTTLANALLAE
HHHHHHHHHHEEHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
IAATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMQELVRATMRLRPDRVIVGEVRGGE
HHCCCCEEEEEECCEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
ALDLIKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAINVVIHIAGR
EEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCC
GRKRHVESIARVVGFDGAGYRMADALEMPFPELPPVPSPSPEPSGELP
CCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]