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The map label for this gene is ydiU [C]

Identifier: 115351947

GI number: 115351947

Start: 2083488

End: 2085056

Strand: Direct

Name: ydiU [C]

Synonym: Bamb_1896

Alternate gene names: 115351947

Gene position: 2083488-2085056 (Clockwise)

Preceding gene: 115351941

Following gene: 115351948

Centisome position: 58.58

GC content: 68.83

Gene sequence:

>1569_bases
ATGTCGTTTTCCCGAAGCGCAGCCGATGCGGCTGACACTCTCCCCGACCTCGCCGCCACGCTCGGCGCGCCGGCCCTTGG
CGCGTTCGTCACGCTCGGCGACGCGTTTCATACGCGGCTGCCGGCCGCGCCGCTGCCCGCGCCGTACGTCGTCGGCTGTT
CCGACGAAGTCGCGCAGCTGCTCGGCCTGCCGGCATCGTTCGCCACCCAGCCCGGCTTCGCCGAGCTGTTCGCCGGCAAC
CCGACGCGCGACTGGCCCGCGCACGCACTGCCGTACGCGTCGGTGTATTCCGGTCACCAGTTCGGCGTGTGGGCCGGCCA
GCTCGGCGACGGCCGCGCGCTGACGATCGGCGAACTCCCCGGCACCGACGGCCGACGCTACGAGCTGCAGATCAAGGGCG
GCGGCCGCACGCCGTATTCGCGGATGGGCGACGGCCGCGCGGTGCTGCGTTCGTCGATCCGCGAATTCCTGTGTTCCGAA
GCGATGCATCACCTCGGCATCCCGACCACGCGCGCGCTCACAGTGATCGGCTCCGACCAGCCGGTGGTGCGCGAGGAGAT
CGAGACGTCGGCCGTGGTCACGCGCGTGTCGGAGAGCTTCGTGCGCTTCGGCCACTTCGAGCACTTCTTCTCGAACGATC
GCCCGGACCTGTTGCGCCAGCTCGCCGATCACGTGATCGACCGCTTCTATCCCGCGTGCCGCGAGGCCGACGATCCGTAC
CTCGCGCTGCTCGAAGCCGCGACGCTGCGCACGGCCGACCTCGTCGCGCAATGGCAGGCCGTCGGCTTCTGCCACGGCGT
GATGAACACCGACAACATGTCGATCCTCGGCCTGACGATCGACTACGGCCCGTTCGGCTTCGTCGACGCGTTCGACGCGA
ATCACATCTGCAACCACTCCGACACGAGCGGCCGCTACGCGTACCGGATGCAGCCGCGCATCGCGCACTGGAACTGCTAC
TGCCTCGCGCAGGCGCTGCTGCCACTGATCGGGCTGCAGCACGGCATCGCCGACGACGATGCGCGCGCCGAGCGCGCGGT
CGACGACGCGCAGGCCGTGCTCGCGAAGTTTCCGGAGCGCTTCGGCCCCGCGCTCGAACGCGCGATGCGTGCGAAGCTCG
GCCTCGAGCTCGAACGCGAGAACGACGCCGAACTTGCGAACAAGCTGCTCGAAACGATGCACGCGAGCCATGCGGACTTC
ACGCTGACGTTCCGCCGCCTCGCGCAGCTGTCGAAGCACGACGCGAGCCGCGACGCGCCGGTGCGCGACCTGTTCATCGA
TCGCGACGCGTTCGATGCGTGGGCGAACCTCTACCGCGAGCGGCTGTCCGAGGAGACGCGCGACGACGCGGCCCGTGCGG
CCGCGATGAACCGCGTGAACCCGAAATACGTGCTGCGCAATCATCTGGCCGAAGTCGCGATCCGGCGCGCGAAGGAAAAG
GACTTTTCCGAAGTCGAGCGACTCGCGCAGGTGCTGCGCCGGCCGTTCGACGAACAACCGGAACATGAAGCGTATGCGGC
ATTGCCGCCCGACTGGGCCGGGTCGCTCGAAGTGAGCTGTTCGTCGTGA

Upstream 100 bases:

>100_bases
GCCCGTCCACGGCGGGACGGGCGTCGCGCAACGCATGCGGGCCGCCATGCGGGCGGCGCGGCGCCGCCTTACAATATCGG
CTTACCCAGAGGCGCTCAAC

Downstream 100 bases:

>100_bases
CCCGCACGACCCGACCGACCGATCAGGAGAACTCCCACATGTCACACGATACCGACGATAAAACCTACCCGTACCAGAAG
GATGACGCCGAGCTGCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 521

Protein sequence:

>522_residues
MSFSRSAADAADTLPDLAATLGAPALGAFVTLGDAFHTRLPAAPLPAPYVVGCSDEVAQLLGLPASFATQPGFAELFAGN
PTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQIKGGGRTPYSRMGDGRAVLRSSIREFLCSE
AMHHLGIPTTRALTVIGSDQPVVREEIETSAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACREADDPY
LALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFVDAFDANHICNHSDTSGRYAYRMQPRIAHWNCY
CLAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPERFGPALERAMRAKLGLELERENDAELANKLLETMHASHADF
TLTFRRLAQLSKHDASRDAPVRDLFIDRDAFDAWANLYRERLSEETRDDAARAAAMNRVNPKYVLRNHLAEVAIRRAKEK
DFSEVERLAQVLRRPFDEQPEHEAYAALPPDWAGSLEVSCSS

Sequences:

>Translated_522_residues
MSFSRSAADAADTLPDLAATLGAPALGAFVTLGDAFHTRLPAAPLPAPYVVGCSDEVAQLLGLPASFATQPGFAELFAGN
PTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQIKGGGRTPYSRMGDGRAVLRSSIREFLCSE
AMHHLGIPTTRALTVIGSDQPVVREEIETSAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACREADDPY
LALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFVDAFDANHICNHSDTSGRYAYRMQPRIAHWNCY
CLAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPERFGPALERAMRAKLGLELERENDAELANKLLETMHASHADF
TLTFRRLAQLSKHDASRDAPVRDLFIDRDAFDAWANLYRERLSEETRDDAARAAAMNRVNPKYVLRNHLAEVAIRRAKEK
DFSEVERLAQVLRRPFDEQPEHEAYAALPPDWAGSLEVSCSS
>Mature_521_residues
SFSRSAADAADTLPDLAATLGAPALGAFVTLGDAFHTRLPAAPLPAPYVVGCSDEVAQLLGLPASFATQPGFAELFAGNP
TRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELPGTDGRRYELQIKGGGRTPYSRMGDGRAVLRSSIREFLCSEA
MHHLGIPTTRALTVIGSDQPVVREEIETSAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACREADDPYL
ALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFVDAFDANHICNHSDTSGRYAYRMQPRIAHWNCYC
LAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPERFGPALERAMRAKLGLELERENDAELANKLLETMHASHADFT
LTFRRLAQLSKHDASRDAPVRDLFIDRDAFDAWANLYRERLSEETRDDAARAAAMNRVNPKYVLRNHLAEVAIRRAKEKD
FSEVERLAQVLRRPFDEQPEHEAYAALPPDWAGSLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=403, Percent_Identity=47.394540942928, Blast_Score=316, Evalue=3e-86,
Organism=Escherichia coli, GI1787999, Length=491, Percent_Identity=46.8431771894094, Blast_Score=419, Evalue=1e-118,
Organism=Saccharomyces cerevisiae, GI6325034, Length=352, Percent_Identity=36.6477272727273, Blast_Score=199, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 57591; Mature: 57460

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSRSAADAADTLPDLAATLGAPALGAFVTLGDAFHTRLPAAPLPAPYVVGCSDEVAQL
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHH
LGLPASFATQPGFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELP
HCCCHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEEECCCC
GTDGRRYELQIKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQ
CCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCC
PVVREEIETSAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACREADDPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
LALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFVDAFDANHICNHS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCC
DTSGRYAYRMQPRIAHWNCYCLAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPER
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
FGPALERAMRAKLGLELERENDAELANKLLETMHASHADFTLTFRRLAQLSKHDASRDAP
HCHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
VRDLFIDRDAFDAWANLYRERLSEETRDDAARAAAMNRVNPKYVLRNHLAEVAIRRAKEK
HHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
DFSEVERLAQVLRRPFDEQPEHEAYAALPPDWAGSLEVSCSS
CHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEECC
>Mature Secondary Structure 
SFSRSAADAADTLPDLAATLGAPALGAFVTLGDAFHTRLPAAPLPAPYVVGCSDEVAQL
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHH
LGLPASFATQPGFAELFAGNPTRDWPAHALPYASVYSGHQFGVWAGQLGDGRALTIGELP
HCCCHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCEEEECCCC
GTDGRRYELQIKGGGRTPYSRMGDGRAVLRSSIREFLCSEAMHHLGIPTTRALTVIGSDQ
CCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCC
PVVREEIETSAVVTRVSESFVRFGHFEHFFSNDRPDLLRQLADHVIDRFYPACREADDPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
LALLEAATLRTADLVAQWQAVGFCHGVMNTDNMSILGLTIDYGPFGFVDAFDANHICNHS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCC
DTSGRYAYRMQPRIAHWNCYCLAQALLPLIGLQHGIADDDARAERAVDDAQAVLAKFPER
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
FGPALERAMRAKLGLELERENDAELANKLLETMHASHADFTLTFRRLAQLSKHDASRDAP
HCHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
VRDLFIDRDAFDAWANLYRERLSEETRDDAARAAAMNRVNPKYVLRNHLAEVAIRRAKEK
HHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
DFSEVERLAQVLRRPFDEQPEHEAYAALPPDWAGSLEVSCSS
CHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA