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The map label for this gene is ygfZ [C]

Identifier: 115351883

GI number: 115351883

Start: 2019298

End: 2020332

Strand: Direct

Name: ygfZ [C]

Synonym: Bamb_1832

Alternate gene names: 115351883

Gene position: 2019298-2020332 (Clockwise)

Preceding gene: 115351873

Following gene: 115351884

Centisome position: 56.78

GC content: 71.11

Gene sequence:

>1035_bases
ATGAGCACACCGTCCGCTTCACCGGCTGCCCAGGCCGCAACTGCCTCGCTCCCCGTTTTCCCCCGCCCGTCCGCTGCCGA
TTTCGACGCACCGGGCGCCTGCATGCCGCTCCCGCAGTTCGGCGTGATCGACGTGGCCGGCGACGACGCCGCGACGTTCC
TGCACAGCCAGCTCACCAACGACATCGAGCATCTCGATGCCGCGAGTGCGCGCCTGTCCGGCTATTGCTCGGCGAAGGGC
CGCCTGCTCGCGTCGTTCCTCGCCTGGCGCGCCGGTCACGGCGTGCAGCTGCTGGTCTCGAAGGACGTCCAGGCCGCCGT
TCAGAAACGCTTGTCCATGTTCGTGCTGCGCGCGAAGGCGAAACTGACGGACGCGAGCGACACGCTCGCGGTGGTCGGCT
TCGCGGGCGACGTGCGCGAGGCGCTGTCGGGCATCTTCGACGCGCTGCCGGACGGCATGCACGTGAAAGTCGACGGCCCG
GCCGGGGCGCTGATCCGCGTGCCGGACGCGGCAGGCCGCAAGCGCTATCTGTGGATCGGGCCGCGCGCGGAAGTCGACGC
GCGCCTCGCCGCGCTCGGCGGCAAGCTGCCGGTCGTGTCGCCGGCCGTATGGGACTGGCTCGACGTGCGCGCGGGCGAGC
CGCGCATCACGCAACCGGCCGTCGAACAGTTCGTCCCGCAGATGGTCAACTTCGACGTGATCGGCGCCGTTAACTTCAGG
AAGGGGTGCTACCCGGGCCAGGAAGTCGTCGCGCGCAGCCAGTACCGCGGCACGATCAAGCGCCGCACCGCGCTCGCGCA
TGTCGCCGGCGAGACCGACACCGTGCATGCCGGCGTCGAGCTGTTCCACAGCGACGACCCCGGCCAGCCGTGCGGAATGA
TCGTCAATGCGGCCGCCGCACCCGCGGGCGGCGTCGATGCGCTCGTCGAGATCAAGCTGGCCGCGCTCGACAGCGGCACG
GTGCACCTCGGTGCGGCCGACGGCCCGACGCTCGCGTTCGACGCGCTCCCGTACGCATGGCCGACGGAAGCGTGA

Upstream 100 bases:

>100_bases
GCGCATTTCTTCAGTAGGGACATGGAAACGTGACTCAGGTAAGACCCATATAATACTTGCTCGCCTCCGTCAAAGTCAGG
GTTGACTGTTCCCTCATTCC

Downstream 100 bases:

>100_bases
CGCACTGACAACCTATTGCACGCCGGTTCGCACGTTGCGGCCGGCGCGCGATGTTTCCTGCGAGAGATTCGCCCGATGTG
CCTGATTGCCTTCGACTGGC

Product: glycine cleavage T protein (aminomethyl transferase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MSTPSASPAAQAATASLPVFPRPSAADFDAPGACMPLPQFGVIDVAGDDAATFLHSQLTNDIEHLDAASARLSGYCSAKG
RLLASFLAWRAGHGVQLLVSKDVQAAVQKRLSMFVLRAKAKLTDASDTLAVVGFAGDVREALSGIFDALPDGMHVKVDGP
AGALIRVPDAAGRKRYLWIGPRAEVDARLAALGGKLPVVSPAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGAVNFR
KGCYPGQEVVARSQYRGTIKRRTALAHVAGETDTVHAGVELFHSDDPGQPCGMIVNAAAAPAGGVDALVEIKLAALDSGT
VHLGAADGPTLAFDALPYAWPTEA

Sequences:

>Translated_344_residues
MSTPSASPAAQAATASLPVFPRPSAADFDAPGACMPLPQFGVIDVAGDDAATFLHSQLTNDIEHLDAASARLSGYCSAKG
RLLASFLAWRAGHGVQLLVSKDVQAAVQKRLSMFVLRAKAKLTDASDTLAVVGFAGDVREALSGIFDALPDGMHVKVDGP
AGALIRVPDAAGRKRYLWIGPRAEVDARLAALGGKLPVVSPAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGAVNFR
KGCYPGQEVVARSQYRGTIKRRTALAHVAGETDTVHAGVELFHSDDPGQPCGMIVNAAAAPAGGVDALVEIKLAALDSGT
VHLGAADGPTLAFDALPYAWPTEA
>Mature_343_residues
STPSASPAAQAATASLPVFPRPSAADFDAPGACMPLPQFGVIDVAGDDAATFLHSQLTNDIEHLDAASARLSGYCSAKGR
LLASFLAWRAGHGVQLLVSKDVQAAVQKRLSMFVLRAKAKLTDASDTLAVVGFAGDVREALSGIFDALPDGMHVKVDGPA
GALIRVPDAAGRKRYLWIGPRAEVDARLAALGGKLPVVSPAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGAVNFRK
GCYPGQEVVARSQYRGTIKRRTALAHVAGETDTVHAGVELFHSDDPGQPCGMIVNAAAAPAGGVDALVEIKLAALDSGTV
HLGAADGPTLAFDALPYAWPTEA

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=326, Percent_Identity=26.9938650306748, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 35888; Mature: 35757

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPSASPAAQAATASLPVFPRPSAADFDAPGACMPLPQFGVIDVAGDDAATFLHSQLTN
CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
DIEHLDAASARLSGYCSAKGRLLASFLAWRAGHGVQLLVSKDVQAAVQKRLSMFVLRAKA
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
KLTDASDTLAVVGFAGDVREALSGIFDALPDGMHVKVDGPAGALIRVPDAAGRKRYLWIG
HCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCCEEEEEEC
PRAEVDARLAALGGKLPVVSPAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGAVNFR
CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCEEEEEEECCC
KGCYPGQEVVARSQYRGTIKRRTALAHVAGETDTVHAGVELFHSDDPGQPCGMIVNAAAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEECCCCCCCCCCEEECCCC
PAGGVDALVEIKLAALDSGTVHLGAADGPTLAFDALPYAWPTEA
CCCCCCEEEEEEEEEECCCEEEEECCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure 
STPSASPAAQAATASLPVFPRPSAADFDAPGACMPLPQFGVIDVAGDDAATFLHSQLTN
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
DIEHLDAASARLSGYCSAKGRLLASFLAWRAGHGVQLLVSKDVQAAVQKRLSMFVLRAKA
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
KLTDASDTLAVVGFAGDVREALSGIFDALPDGMHVKVDGPAGALIRVPDAAGRKRYLWIG
HCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCCCCCEEEEEEC
PRAEVDARLAALGGKLPVVSPAVWDWLDVRAGEPRITQPAVEQFVPQMVNFDVIGAVNFR
CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCEEEEEEECCC
KGCYPGQEVVARSQYRGTIKRRTALAHVAGETDTVHAGVELFHSDDPGQPCGMIVNAAAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEECCCCCCCCCCEEECCCC
PAGGVDALVEIKLAALDSGTVHLGAADGPTLAFDALPYAWPTEA
CCCCCCEEEEEEEEEECCCEEEEECCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA