Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351807

Identifier: 115351807

GI number: 115351807

Start: 1942350

End: 1943210

Strand: Direct

Name: 115351807

Synonym: Bamb_1756

Alternate gene names: NA

Gene position: 1942350-1943210 (Clockwise)

Preceding gene: 115351805

Following gene: 115351817

Centisome position: 54.61

GC content: 71.66

Gene sequence:

>861_bases
ATGCGACTGATCGACTGGAACGTTCAATGGGGTCGGGACGCGGACGGCGTCGTCGACCTCGCGCGCACCATCGCCGCCGC
CCGCCGCCTCGGCGACTTCGACGTGCTGTGCATGCAGGAAGTCACGCGCGGCTTCGGCGCGCTGCCCGGCCAGCCGGGCC
CTGATCAGTTCACCGAACTGGCGGCGTTGCTGCCCGGCTATACGATCTTCGAGGCGATCGGCGCCGACCTGCCGCCGCTC
GAACCCGACGCGGCGCGCCGGCAGTTCGGCAATGCGATCGCGACCCGGCTGCCGGTCGGACGCGTGCTGCGCCAGTTGCT
GCCGTGGCCGGCCGACGCCAGCGGGCCGTCGATGCCGCGTGTCGCGCTGGAGGTCGAGCTGACGACGCCGTCGGGCGCGC
TGCGTATCATCACGACGCACCTCGAATTCTATTCCGCGCGCCAGCGGCTCGCACAGGTGGATGCGATGCGCGCCCGGCAC
CGCGAAGCGTGCGCCCACGCCGACCAGCCCGCCCCGGCGGAGAACGCCACCGGACCGTTCACCGCGACCGGCCAGGCGCG
CGACGCGATCATCTGCGGCGATTTCAACAGCGCGTTCGACAGCGATGCATACCGGCGCCTGCTGGAGCCGATCGCGGACG
CGCCGTCGTTCGTCGATGCGTGGGTTGCCCGGCACGCGGGCCATACGCCGCCGCCGACCGCCGGCGTCTACGACACCGCG
CAATGGTCGGACGGGCCGCTCGCGTGCGACTTCGTGTTCGTGACCGATACGCTGCTGCCGCGCGTCACGCGCTGCGAGAT
CGACGGCGACGTGCGCGCGTCGGATCACCAGCCGGTCGTGCTCGAGGTCGAGGTCGATTGA

Upstream 100 bases:

>100_bases
CACGTAATGCACAAGGGCCCGCAGGCGCAGTGTCTTGCCGACCCACCGGCGGCACAAGTTCTGCTCGCAGGTTGGCTCTC
TGCTTGCAGGAGAATCGACC

Downstream 100 bases:

>100_bases
TCGCGGCCGCGACGCGGGCCGCCCGCGTCACGCGTCGAAGCCGGCCAGGTATTCGGCCCAATGCGACGCAGGCTCCTGCG
CAAGCGAATTCTTCACGAGC

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: Metal-Dependent Hydrolase; Phosphatase; Endonuclease/Exonuclease/Phosphatase Family Protein; Phosphatase Protein; Endonuclease / Exonuclease / Phosphatase; Metal-Dependent Exonuclease Protein

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRLIDWNVQWGRDADGVVDLARTIAAARRLGDFDVLCMQEVTRGFGALPGQPGPDQFTELAALLPGYTIFEAIGADLPPL
EPDAARRQFGNAIATRLPVGRVLRQLLPWPADASGPSMPRVALEVELTTPSGALRIITTHLEFYSARQRLAQVDAMRARH
REACAHADQPAPAENATGPFTATGQARDAIICGDFNSAFDSDAYRRLLEPIADAPSFVDAWVARHAGHTPPPTAGVYDTA
QWSDGPLACDFVFVTDTLLPRVTRCEIDGDVRASDHQPVVLEVEVD

Sequences:

>Translated_286_residues
MRLIDWNVQWGRDADGVVDLARTIAAARRLGDFDVLCMQEVTRGFGALPGQPGPDQFTELAALLPGYTIFEAIGADLPPL
EPDAARRQFGNAIATRLPVGRVLRQLLPWPADASGPSMPRVALEVELTTPSGALRIITTHLEFYSARQRLAQVDAMRARH
REACAHADQPAPAENATGPFTATGQARDAIICGDFNSAFDSDAYRRLLEPIADAPSFVDAWVARHAGHTPPPTAGVYDTA
QWSDGPLACDFVFVTDTLLPRVTRCEIDGDVRASDHQPVVLEVEVD
>Mature_286_residues
MRLIDWNVQWGRDADGVVDLARTIAAARRLGDFDVLCMQEVTRGFGALPGQPGPDQFTELAALLPGYTIFEAIGADLPPL
EPDAARRQFGNAIATRLPVGRVLRQLLPWPADASGPSMPRVALEVELTTPSGALRIITTHLEFYSARQRLAQVDAMRARH
REACAHADQPAPAENATGPFTATGQARDAIICGDFNSAFDSDAYRRLLEPIADAPSFVDAWVARHAGHTPPPTAGVYDTA
QWSDGPLACDFVFVTDTLLPRVTRCEIDGDVRASDHQPVVLEVEVD

Specific function: Unknown

COG id: COG3568

COG function: function code R; Metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31017; Mature: 31017

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLIDWNVQWGRDADGVVDLARTIAAARRLGDFDVLCMQEVTRGFGALPGQPGPDQFTEL
CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AALLPGYTIFEAIGADLPPLEPDAARRQFGNAIATRLPVGRVLRQLLPWPADASGPSMPR
HHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCE
VALEVELTTPSGALRIITTHLEFYSARQRLAQVDAMRARHREACAHADQPAPAENATGPF
EEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
TATGQARDAIICGDFNSAFDSDAYRRLLEPIADAPSFVDAWVARHAGHTPPPTAGVYDTA
EECCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC
QWSDGPLACDFVFVTDTLLPRVTRCEIDGDVRASDHQPVVLEVEVD
CCCCCCEEEEEEEHHHHHHCCCEEEECCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MRLIDWNVQWGRDADGVVDLARTIAAARRLGDFDVLCMQEVTRGFGALPGQPGPDQFTEL
CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AALLPGYTIFEAIGADLPPLEPDAARRQFGNAIATRLPVGRVLRQLLPWPADASGPSMPR
HHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCE
VALEVELTTPSGALRIITTHLEFYSARQRLAQVDAMRARHREACAHADQPAPAENATGPF
EEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
TATGQARDAIICGDFNSAFDSDAYRRLLEPIADAPSFVDAWVARHAGHTPPPTAGVYDTA
EECCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC
QWSDGPLACDFVFVTDTLLPRVTRCEIDGDVRASDHQPVVLEVEVD
CCCCCCEEEEEEEHHHHHHCCCEEEECCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA