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The map label for this gene is tex [H]

Identifier: 115351787

GI number: 115351787

Start: 1918548

End: 1920872

Strand: Direct

Name: tex [H]

Synonym: Bamb_1736

Alternate gene names: 115351787

Gene position: 1918548-1920872 (Clockwise)

Preceding gene: 115351783

Following gene: 115351805

Centisome position: 53.94

GC content: 68.04

Gene sequence:

>2325_bases
ATGACGGAAACCGTAGCACTCAAGATCGTACAGCGCATCGCCACCGAACTGTCCGTCCAGCCGCGCCAGGTCGCGGCGGC
CGTGCAACTCCTCGACGAAGGCTCGACCGTTCCGTTCATTGCCCGGTACCGCAAGGAAGTGACGGGCAACCTGGACGACA
CGCAGCTGCGCCAGCTCGAGGAGCGCCTCCTGTATCTGCGCGAACTCGAGGATCGCCGCGCGACGATCCTGTCGAGCATC
GACGAACAGGGCAAGCTGACCGACGAACTGCGCGCCGCGATCGACGCGGCCGACAGCAAGCAGGTGCTCGAAGACCTTTA
TCTGCCGTACAAGCCGAAGCGCCGCACGCGCGCGCAGATCGCCCGCGAAGCCGGCCTCGAGCCGCTCGCGCAGGCGCTGC
TCGCGAATCCGCTGCTCGACCCGCAGGCCGAAGCCGCCGCGTACGTCGATGCCGACAAGGGTGTCGCCGACGTGAAGGCC
GCGCTCGACGGCGCGCGCGACATCCTGTCCGAACAGTTCGGCGAAACGGCCGAGCTGCTCGGCAAGCTGCGCGACTATCT
GCACAGCCAGGGCGTCGTGTCGTCGGCCGTGGTCGAAGGCAAGGAAAACGAGGAAGGCGAGAAATTCCGCGACTACTACG
ACTACGCTGAGACGATCCGGACCGTGCCGTCGCACCGCGCGCTCGCGCTGTTCCGCGGCCGCAACGCCGGTGTGCTGACC
GTCAAGCTGGGCCTCGGCGAGGAGCTCGACGCGCAGGTTCCGCATCCCGGCGAAGCGATGATCGCGCGCCATTTCGGGAT
CGCGAACCAGAACCGTCCCGCCGACAAGTGGCTGTCCGACGTGTGCCGCTGGTGCTGGCGCGTGAAGGTGCAGCCGCACA
TCGAGAACGAACTGCTCACGCAACTGCGTGAAACGGCGGAAGCCGAGGCGATCCGCGTGTTCGCGCGCAACCTGAAGGAC
CTGCTGCTGGCCGCGCCGGCCGGCCCGAAGGCCGTGATCGGTCTCGACCCCGGCCTGCGCACGGGCGTGAAGGTCGCCGT
GGTCGACCGCACCGGCAAGCTGCTCGCGACCGACACGATCTACCCGCACGAGCCGCGCCGCGACTGGGACGGCTCGCTCG
CGAAGCTCGCGCGCATCGCCGCGCAGACGCAGGCCGAGCTGATCAGCATCGGCAACGGCACCGCGTCCCGTGAAACCGAC
AAGCTCGCGAGCGAGCTGATCTCGAAGCACCCCGAACTGCGGCTGCAGAAGATCGTCGTGTCGGAAGCCGGCGCGTCGGT
CTACTCGGCGTCCGAGCTGGCCGCGAAGGAATTCCCGGAACTCGACGTGTCGCTGCGCGGCGCCGTGTCGATCGCGCGCC
GTCTGCAGGATCCGCTCGCCGAGCTCGTGAAGATCGAGCCGAAGGCGATCGGCGTCGGCCAGTACCAGCACGACGTGAAC
CAGCGCGAACTCGCCCGCTCGCTCGACGCGGTCGTCGAGGATTGCGTGAACGCGGTCGGCGTTGACGCGAATACCGCGTC
GGTCGCGCTGCTGGCACGCGTATCGGGCCTGAATGCGACGCTCGCGCGCAACATCGTCGACTATCGCGACGCGAATGGGC
CGTTCCCGTCGCGCGACCATCTGCGCAAGGTGCCGCGCCTCGGCGACAAGACCTTCGAACAGGCCGCCGGCTTCCTGCGC
ATCAACGGCGGCGAGAATCCGCTCGACCGGTCGTCGGTCCACCCGGAGGCCTACCCGGTCGTCGAACGGATCCTCGCGAA
GATCAACAAGCGCATCGATGACGTGCTCGGCAGCCGCGACGCGCTGTCCGGACTGTCGCCGACGGAATTTGTTGACGAAC
GTTTCGGCCTGCCGACCGTGCGCGACATCCTGTCCGAACTCGAAAAACCGGGTCGCGACCCGCGGCCCGAATTCAAGACC
GCCACGTTCCGCGACGGCGTCGAGAAGGTGTCCGATCTGATGCCCGGCATGCTCCTCGAAGGGGTCGTGACGAACGTCGC
GGCGTTCGGCGCGTTCGTGGATATCGGCGTGCACCAGGACGGCCTCGTCCACGTGTCGGCGATGTCGACGAAGTTCATCA
AGGATCCGCACGAAGTCGTGAAGGCCGGCCAGGTCGTCAAGGTCAAGGTGCTCGACGTCGACGTGAAGCGTCAGCGCATT
GCGCTGACGATGCGCCTCGACGACGAAGCGGCCGCGCCCGGCATGGCGTCGCGCAGCAGTCAGGAGCGCGGCAATGCCGG
CCGCGGCGCGGCCCGCCCGCAGCGTTCGCGCGAGCCGGAACCGGCCGGTGCGATGGCCGCGGCGTTCGCGAAGCTGAAGC
GCTGA

Upstream 100 bases:

>100_bases
TTCACCCACCCGCGGCATCTGGTCCGGCGGGCCCGTCTCGCAGCCCGCCGCGCGGTCTGCCGGCCCGCGCCGCGATTTCA
GCAGGCACATCATCCACGAC

Downstream 100 bases:

>100_bases
ACGCGCGAAGGTCGTCCACGCACGAAAAAAAGCCCGCCGACAGGCGGGCTTTTTCATGGCGCGGCAAGCGCACTGCCGAA
TTGGGCCGCATTCGCGGCCC

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 774; Mature: 773

Protein sequence:

>774_residues
MTETVALKIVQRIATELSVQPRQVAAAVQLLDEGSTVPFIARYRKEVTGNLDDTQLRQLEERLLYLRELEDRRATILSSI
DEQGKLTDELRAAIDAADSKQVLEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQAEAAAYVDADKGVADVKA
ALDGARDILSEQFGETAELLGKLRDYLHSQGVVSSAVVEGKENEEGEKFRDYYDYAETIRTVPSHRALALFRGRNAGVLT
VKLGLGEELDAQVPHPGEAMIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELLTQLRETAEAEAIRVFARNLKD
LLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKLLATDTIYPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETD
KLASELISKHPELRLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
QRELARSLDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSRDHLRKVPRLGDKTFEQAAGFLR
INGGENPLDRSSVHPEAYPVVERILAKINKRIDDVLGSRDALSGLSPTEFVDERFGLPTVRDILSELEKPGRDPRPEFKT
ATFRDGVEKVSDLMPGMLLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRI
ALTMRLDDEAAAPGMASRSSQERGNAGRGAARPQRSREPEPAGAMAAAFAKLKR

Sequences:

>Translated_774_residues
MTETVALKIVQRIATELSVQPRQVAAAVQLLDEGSTVPFIARYRKEVTGNLDDTQLRQLEERLLYLRELEDRRATILSSI
DEQGKLTDELRAAIDAADSKQVLEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQAEAAAYVDADKGVADVKA
ALDGARDILSEQFGETAELLGKLRDYLHSQGVVSSAVVEGKENEEGEKFRDYYDYAETIRTVPSHRALALFRGRNAGVLT
VKLGLGEELDAQVPHPGEAMIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELLTQLRETAEAEAIRVFARNLKD
LLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKLLATDTIYPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETD
KLASELISKHPELRLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
QRELARSLDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSRDHLRKVPRLGDKTFEQAAGFLR
INGGENPLDRSSVHPEAYPVVERILAKINKRIDDVLGSRDALSGLSPTEFVDERFGLPTVRDILSELEKPGRDPRPEFKT
ATFRDGVEKVSDLMPGMLLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRI
ALTMRLDDEAAAPGMASRSSQERGNAGRGAARPQRSREPEPAGAMAAAFAKLKR
>Mature_773_residues
TETVALKIVQRIATELSVQPRQVAAAVQLLDEGSTVPFIARYRKEVTGNLDDTQLRQLEERLLYLRELEDRRATILSSID
EQGKLTDELRAAIDAADSKQVLEDLYLPYKPKRRTRAQIAREAGLEPLAQALLANPLLDPQAEAAAYVDADKGVADVKAA
LDGARDILSEQFGETAELLGKLRDYLHSQGVVSSAVVEGKENEEGEKFRDYYDYAETIRTVPSHRALALFRGRNAGVLTV
KLGLGEELDAQVPHPGEAMIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELLTQLRETAEAEAIRVFARNLKDL
LLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKLLATDTIYPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETDK
LASELISKHPELRLQKIVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQ
RELARSLDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSRDHLRKVPRLGDKTFEQAAGFLRI
NGGENPLDRSSVHPEAYPVVERILAKINKRIDDVLGSRDALSGLSPTEFVDERFGLPTVRDILSELEKPGRDPRPEFKTA
TFRDGVEKVSDLMPGMLLEGVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRIA
LTMRLDDEAAAPGMASRSSQERGNAGRGAARPQRSREPEPAGAMAAAFAKLKR

Specific function: Transcription accessory protein. Exact function not known [H]

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=793, Percent_Identity=33.7957124842371, Blast_Score=400, Evalue=1e-111,
Organism=Homo sapiens, GI27597090, Length=402, Percent_Identity=23.6318407960199, Blast_Score=78, Evalue=4e-14,
Organism=Escherichia coli, GI87082262, Length=753, Percent_Identity=64.1434262948207, Blast_Score=938, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=40.7894736842105, Blast_Score=66, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=731, Percent_Identity=31.0533515731874, Blast_Score=266, Evalue=4e-71,
Organism=Caenorhabditis elegans, GI17552892, Length=261, Percent_Identity=29.1187739463602, Blast_Score=67, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321552, Length=217, Percent_Identity=25.3456221198157, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI62484314, Length=752, Percent_Identity=31.781914893617, Blast_Score=369, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84597; Mature: 84466

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETVALKIVQRIATELSVQPRQVAAAVQLLDEGSTVPFIARYRKEVTGNLDDTQLRQLE
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
ERLLYLRELEDRRATILSSIDEQGKLTDELRAAIDAADSKQVLEDLYLPYKPKRRTRAQI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
AREAGLEPLAQALLANPLLDPQAEAAAYVDADKGVADVKAALDGARDILSEQFGETAELL
HHHHCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
GKLRDYLHSQGVVSSAVVEGKENEEGEKFRDYYDYAETIRTVPSHRALALFRGRNAGVLT
HHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE
VKLGLGEELDAQVPHPGEAMIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELLT
EEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
QLRETAEAEAIRVFARNLKDLLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKLLATDTI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEECCC
YPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETDKLASELISKHPELRLQKIVV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
SEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
QRELARSLDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSRDH
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHH
LRKVPRLGDKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERILAKINKRIDDVLGSRD
HHHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
ALSGLSPTEFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFRDGVEKVSDLMPGMLLE
HHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
GVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRI
HHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHCCHHHHHHCCCEEEEEEEEECCCCCEE
ALTMRLDDEAAAPGMASRSSQERGNAGRGAARPQRSREPEPAGAMAAAFAKLKR
EEEEEECCHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TETVALKIVQRIATELSVQPRQVAAAVQLLDEGSTVPFIARYRKEVTGNLDDTQLRQLE
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
ERLLYLRELEDRRATILSSIDEQGKLTDELRAAIDAADSKQVLEDLYLPYKPKRRTRAQI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
AREAGLEPLAQALLANPLLDPQAEAAAYVDADKGVADVKAALDGARDILSEQFGETAELL
HHHHCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
GKLRDYLHSQGVVSSAVVEGKENEEGEKFRDYYDYAETIRTVPSHRALALFRGRNAGVLT
HHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE
VKLGLGEELDAQVPHPGEAMIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELLT
EEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
QLRETAEAEAIRVFARNLKDLLLAAPAGPKAVIGLDPGLRTGVKVAVVDRTGKLLATDTI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEECCC
YPHEPRRDWDGSLAKLARIAAQTQAELISIGNGTASRETDKLASELISKHPELRLQKIVV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
SEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVN
HHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
QRELARSLDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSRDH
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHH
LRKVPRLGDKTFEQAAGFLRINGGENPLDRSSVHPEAYPVVERILAKINKRIDDVLGSRD
HHHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
ALSGLSPTEFVDERFGLPTVRDILSELEKPGRDPRPEFKTATFRDGVEKVSDLMPGMLLE
HHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
GVVTNVAAFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQVVKVKVLDVDVKRQRI
HHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHCCHHHHHHCCCEEEEEEEEECCCCCEE
ALTMRLDDEAAAPGMASRSSQERGNAGRGAARPQRSREPEPAGAMAAAFAKLKR
EEEEEECCHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8755871; 12910271 [H]