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The map label for this gene is yfdE [H]

Identifier: 115351652

GI number: 115351652

Start: 1774542

End: 1775732

Strand: Direct

Name: yfdE [H]

Synonym: Bamb_1599

Alternate gene names: 115351652

Gene position: 1774542-1775732 (Clockwise)

Preceding gene: 115351651

Following gene: 115351653

Centisome position: 49.9

GC content: 71.12

Gene sequence:

>1191_bases
ATGACGCGACCCCTGGACGGTATCCGCGTGCTGGAACTCGGCCAACTGATCGCCGGGCCGTTCGCGGGCCGGATGCTCGC
CGAATTCGGCGCGGACGTGATCAAGGTCGAGCCGCCCGGCGTCGGCGACCCGCTGCGCAAATGGCGGCTGCTGCACGACG
GCACATCGGTCTGGTGGGCCGCGCAGTCGCGCAACAAAACGTCGCTCACGCTCGACCTGCGCACGCCCGAGGGGCAGGAC
GTCGTGCGCCGCCTCGTCGCCGAGACCGACGTGCTGATCGAGAACTTCCGGCCCGGCACGCTCGAGGGCTGGGGGCTCGG
CTGGGAGACGCTGTCCGCGATCAACCCGGGGCTCGTGATGTTGCGCGTGTCGGGCTTCGGGCAGACCGGCCCGTATCGCG
ACCGGCCCGGCTTCGGTGTGATCGCCGAGGCGATGGGCGGGCTGCGCCACCTCACTGGCGAACCGGGTCGCACGCCGGTG
CGCGTCGGCGTGTCGCTCGGCGATTCGCTGTCGGCGCTGCACGGCGTGATCGGCATCCTGCTCGCGCTGCGGCATCGCGA
GTTGCAGGGCGGCAACGGGCAGGTCGTCGACGTCGCGCTGTACGAATCCGTCTTCAACATGATGGAAAGCCTGCTGCCCG
AATACTCGGCATTCGGCGCGGTGCGCGAGGCGGCCGGCAGCAGCCTGCCCGGCATCGCGCCGACCAACGCGTACCGTTGC
CGCGACGGCAAATACGCACTGATCGCCGGCAACGGCGACAGCATCTTCCGGCGCCTGATGGAATTGATCGGGCGTCCCGA
CCTCGGCGGCGATCCCGCGCTCGCGCACAACGACGGGCGCGTCGCGCAGGTCGCGCGCATCGACGCGGCGATCGGCGAAT
GGAGCGCGCGGCACGACCTCGACGACGTGCTCGCCGCGCTGAACGACGCGCGCATCCCGTCCGGGCGCATCTACGACGTC
GCCGACATCGCGGCCGATCCGCATTACCGCGCCCGCGACATGATCGTCGACGCCGCGCTGCCCGACGGCACACCCGTGCT
CGTGCCGGGCATCGTGCCGAAACTCGGCGCGACGCCGGGACGCATCGAGCGTCCCGCACCCGCGCTCGGCGCCGATACCG
AGGCGGTACTCGAATCGATCGGCATCGATACTGCGACGCGCGACGCGTGGCGCACGCGCGGCGTGATCTGA

Upstream 100 bases:

>100_bases
TCCGTTCGGGAAAGGCTGGTTGAGCATCGATCGATTTTCGCCGGGCGCGAACGCCGTCATGATCGCCGTCATCGACAACA
CGATTTCATCGGAGACAGTC

Downstream 100 bases:

>100_bases
ACTGGCCAGCAGAGCGACGACATGAGCCAGCACCCCCAACGACTCTATATCCACGAAGTCGCGACACGCGACGGTTTCCA
GAATGAAGCGGCGTTCGTCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTRPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKVEPPGVGDPLRKWRLLHDGTSVWWAAQSRNKTSLTLDLRTPEGQD
VVRRLVAETDVLIENFRPGTLEGWGLGWETLSAINPGLVMLRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPV
RVGVSLGDSLSALHGVIGILLALRHRELQGGNGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRC
RDGKYALIAGNGDSIFRRLMELIGRPDLGGDPALAHNDGRVAQVARIDAAIGEWSARHDLDDVLAALNDARIPSGRIYDV
ADIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLGATPGRIERPAPALGADTEAVLESIGIDTATRDAWRTRGVI

Sequences:

>Translated_396_residues
MTRPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKVEPPGVGDPLRKWRLLHDGTSVWWAAQSRNKTSLTLDLRTPEGQD
VVRRLVAETDVLIENFRPGTLEGWGLGWETLSAINPGLVMLRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPV
RVGVSLGDSLSALHGVIGILLALRHRELQGGNGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRC
RDGKYALIAGNGDSIFRRLMELIGRPDLGGDPALAHNDGRVAQVARIDAAIGEWSARHDLDDVLAALNDARIPSGRIYDV
ADIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLGATPGRIERPAPALGADTEAVLESIGIDTATRDAWRTRGVI
>Mature_395_residues
TRPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKVEPPGVGDPLRKWRLLHDGTSVWWAAQSRNKTSLTLDLRTPEGQDV
VRRLVAETDVLIENFRPGTLEGWGLGWETLSAINPGLVMLRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPVR
VGVSLGDSLSALHGVIGILLALRHRELQGGNGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRCR
DGKYALIAGNGDSIFRRLMELIGRPDLGGDPALAHNDGRVAQVARIDAAIGEWSARHDLDDVLAALNDARIPSGRIYDVA
DIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLGATPGRIERPAPALGADTEAVLESIGIDTATRDAWRTRGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=379, Percent_Identity=29.287598944591, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI300863124, Length=405, Percent_Identity=27.9012345679012, Blast_Score=177, Evalue=2e-44,
Organism=Homo sapiens, GI300863126, Length=379, Percent_Identity=27.4406332453826, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI13376042, Length=405, Percent_Identity=24.1975308641975, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI266456254, Length=393, Percent_Identity=28.7531806615776, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI42794625, Length=393, Percent_Identity=28.7531806615776, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=33.4600760456274, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=33.4615384615385, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=39.7260273972603, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=40.4109589041096, Blast_Score=93, Evalue=5e-19,
Organism=Escherichia coli, GI87082093, Length=350, Percent_Identity=33.7142857142857, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1788717, Length=403, Percent_Identity=31.5136476426799, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1786222, Length=387, Percent_Identity=29.4573643410853, Blast_Score=147, Evalue=8e-37,
Organism=Caenorhabditis elegans, GI115535051, Length=311, Percent_Identity=28.9389067524116, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=267, Percent_Identity=31.0861423220974, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24648431, Length=378, Percent_Identity=31.4814814814815, Blast_Score=188, Evalue=5e-48,
Organism=Drosophila melanogaster, GI24585488, Length=362, Percent_Identity=29.5580110497238, Blast_Score=122, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42265; Mature: 42134

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKVEPPGVGDPLRKWRLLHDGTSVWWA
CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEE
AQSRNKTSLTLDLRTPEGQDVVRRLVAETDVLIENFRPGTLEGWGLGWETLSAINPGLVM
ECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEE
LRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPVRVGVSLGDSLSALHGVIGIL
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH
LALRHRELQGGNGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRC
HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
RDGKYALIAGNGDSIFRRLMELIGRPDLGGDPALAHNDGRVAQVARIDAAIGEWSARHDL
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEECCCCCEEHHHHHHHHHHCCHHHCCH
DDVLAALNDARIPSGRIYDVADIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLGATPG
HHHHHHHHHCCCCCCCEEEHHHHCCCCCCCHHHEEEEECCCCCCEEEECCCCHHCCCCCC
RIERPAPALGADTEAVLESIGIDTATRDAWRTRGVI
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TRPLDGIRVLELGQLIAGPFAGRMLAEFGADVIKVEPPGVGDPLRKWRLLHDGTSVWWA
CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEE
AQSRNKTSLTLDLRTPEGQDVVRRLVAETDVLIENFRPGTLEGWGLGWETLSAINPGLVM
ECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEE
LRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPVRVGVSLGDSLSALHGVIGIL
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH
LALRHRELQGGNGQVVDVALYESVFNMMESLLPEYSAFGAVREAAGSSLPGIAPTNAYRC
HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
RDGKYALIAGNGDSIFRRLMELIGRPDLGGDPALAHNDGRVAQVARIDAAIGEWSARHDL
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEECCCCCEEHHHHHHHHHHCCHHHCCH
DDVLAALNDARIPSGRIYDVADIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLGATPG
HHHHHHHHHCCCCCCCEEEHHHHCCCCCCCHHHEEEEECCCCCCEEEECCCCHHCCCCCC
RIERPAPALGADTEAVLESIGIDTATRDAWRTRGVI
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]