Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351584

Identifier: 115351584

GI number: 115351584

Start: 1682012

End: 1683031

Strand: Direct

Name: 115351584

Synonym: Bamb_1531

Alternate gene names: NA

Gene position: 1682012-1683031 (Clockwise)

Preceding gene: 115351583

Following gene: 115351585

Centisome position: 47.29

GC content: 70.1

Gene sequence:

>1020_bases
ATGACCCTGCTTTCGTTGCCGACGCTCGACGACCTGCGTATCGAGCCGGGGCTGCCCACCGTCGTGTCGCCGCGCGGCGC
CGACGGCATGTCGATCGACGAAGTCGCGCCGCTGGCGCGCGCCATCGCGGCCGACACGCTCGAACGGGCGGGCGGTGTGC
TGTTCACGGGCTTTCACGTGCCGTCGATCGATGCGTTCCAGCAGTTCGCGGCATCGTTCGGCGATCCGCTGATTGGCTAT
GAATACGCGTCGACGCCGCGCAGCCAGGTCGAAGGCGCCGTCTATACGTCGACCGAATACCCGCCGCACCGCGCGATTCC
GCTGCACAACGAGCAGTCGTACACGCGCGAGTGGCCGCTGCGGATCTGGTTCCATTGCGCGCTCGCGGCGCCGAAGGGCG
GGGCGACGCCGATCGCGGACAGCCGCGCCGTCTATCGCGCGCTCGATCCGGCGCTCGTCGCGCGCTTCGAGCAGCGCGAG
CTGCTGTACGTGCGCAATTTCGGCCAGGGGCTCGACCTGCCGTGGCAGCAGTCGTTCGGCACCGACGAGCCGGCCGAGGT
CGAGCGGATGTGCGCGGCGCGCGGGATCGAATGCACGTGGCGCACCGACGACGACGGCGAACTGCTGCTGCGCACGCGCG
AACGCTGCCAGGCCGTCGCGCGCCATCCACGCACCGGCGACCGCGTGTGGTTCAACCAGGCGAACCTGTTTCACCTGTCC
GCGCTCGACGACGACATGCAGGAAGCGCTCGTCGATGCGGTCGGGGTCGAGAACGTGCCGCGCAACGTGTACTACGGCGA
CGGCGCGCCGCTCGAGGCCGACGCGCTCGCGGAGATCCGCGGGGTGCTCGAGCGCCAGCGCATCGTGTTCCCGTGGCGCA
CGGGCGACGTGCTGATGCTCGACAACATGCTGACCGCGCATGCGCGCGACCCGTTCGAAGGGCCGCGCAAGGTGGTCGTG
GCGATGGCGCAGAGCTACACGGTCCCGCGCGCGACCGAACGGAGGACCGATGACGCGTAG

Upstream 100 bases:

>100_bases
CCCGCGAGCCTGCGCCGCGCGATGGACGGCGAGCGCGCGACGCGCGCGTCGTGACCCGTTGCGCCGCGCTTGGCGGCGCG
CCACCTGAAGAGGACGTTGC

Downstream 100 bases:

>100_bases
TACCGCCGCGCTTGCCGCGCGCGGATTGACGGTGGGTTATCGCGACCATGTCGTGATCGACGGGCTGGACCTGTCGATCG
CGGCCGGCCGCGTGACGGCG

Product: taurine catabolism dioxygenase TauD/TfdA

Products: NA

Alternate protein names: SyrP Protein; SyrP-Like Protein; Non-Ribosomal Peptide Synthetase; Regulatory Protein; Regulatory Protein B; Amino Acid Adenylation Domain Protein; Taurine Catabolism Dioxygenase TauD/TfdA Family; Amino Acid Adenylation Domain-Containing Protein; Pyoverdine Biosynthesis Regulatory Gene; Condensation Domain-Containing Protein; Taurine Catabolism Dioxygenase TauD TfdA Family; Taurine Catabolism Dioxygenase Taud/Tfda; SyrP-Like Regulatory Protein; NRPS-Like Protein; Peptide Synthase; Syringomycin Biosynthesis; Oxidoreductase; Clavaminic Acid Synthetase-Like Protein; Pyoverdine Biosynthesis Regulatory Gene SyrP-Like; Non Ribosomal Peptide Synthase Antibiotic Synthesis; Multi-Domain Non-Ribosomal Peptide Synthetase; Syrp Like Protein Albicidin Biosynthesis Regulation; Regulatory Protein SyrP-Like; Syringomycin Biosynthesis ; Pyoverdine Biosynthesis Regulatory Protein SyrP-Like; Syringomycin Synthesis Regulator SyrP

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHVPSIDAFQQFAASFGDPLIGY
EYASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPLRIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQRE
LLYVRNFGQGLDLPWQQSFGTDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLS
ALDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLMLDNMLTAHARDPFEGPRKVVV
AMAQSYTVPRATERRTDDA

Sequences:

>Translated_339_residues
MTLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHVPSIDAFQQFAASFGDPLIGY
EYASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPLRIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQRE
LLYVRNFGQGLDLPWQQSFGTDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLS
ALDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLMLDNMLTAHARDPFEGPRKVVV
AMAQSYTVPRATERRTDDA
>Mature_338_residues
TLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHVPSIDAFQQFAASFGDPLIGYE
YASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPLRIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQREL
LYVRNFGQGLDLPWQQSFGTDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLSA
LDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLMLDNMLTAHARDPFEGPRKVVVA
MAQSYTVPRATERRTDDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37708; Mature: 37577

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHV
CCEECCCCCCCCEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
PSIDAFQQFAASFGDPLIGYEYASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPL
CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCE
RIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQRELLYVRNFGQGLDLPWQQSFG
EEEEEEEEECCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHEEEEECCCCCCCCCHHHCCC
TDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLS
CCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEE
ALDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLML
CCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCCEEEE
DNMLTAHARDPFEGPRKVVVAMAQSYTVPRATERRTDDA
CCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHV
CEECCCCCCCCEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
PSIDAFQQFAASFGDPLIGYEYASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPL
CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCE
RIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQRELLYVRNFGQGLDLPWQQSFG
EEEEEEEEECCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHEEEEECCCCCCCCCHHHCCC
TDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLS
CCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEE
ALDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLML
CCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCCEEEE
DNMLTAHARDPFEGPRKVVVAMAQSYTVPRATERRTDDA
CCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA