| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351584
Identifier: 115351584
GI number: 115351584
Start: 1682012
End: 1683031
Strand: Direct
Name: 115351584
Synonym: Bamb_1531
Alternate gene names: NA
Gene position: 1682012-1683031 (Clockwise)
Preceding gene: 115351583
Following gene: 115351585
Centisome position: 47.29
GC content: 70.1
Gene sequence:
>1020_bases ATGACCCTGCTTTCGTTGCCGACGCTCGACGACCTGCGTATCGAGCCGGGGCTGCCCACCGTCGTGTCGCCGCGCGGCGC CGACGGCATGTCGATCGACGAAGTCGCGCCGCTGGCGCGCGCCATCGCGGCCGACACGCTCGAACGGGCGGGCGGTGTGC TGTTCACGGGCTTTCACGTGCCGTCGATCGATGCGTTCCAGCAGTTCGCGGCATCGTTCGGCGATCCGCTGATTGGCTAT GAATACGCGTCGACGCCGCGCAGCCAGGTCGAAGGCGCCGTCTATACGTCGACCGAATACCCGCCGCACCGCGCGATTCC GCTGCACAACGAGCAGTCGTACACGCGCGAGTGGCCGCTGCGGATCTGGTTCCATTGCGCGCTCGCGGCGCCGAAGGGCG GGGCGACGCCGATCGCGGACAGCCGCGCCGTCTATCGCGCGCTCGATCCGGCGCTCGTCGCGCGCTTCGAGCAGCGCGAG CTGCTGTACGTGCGCAATTTCGGCCAGGGGCTCGACCTGCCGTGGCAGCAGTCGTTCGGCACCGACGAGCCGGCCGAGGT CGAGCGGATGTGCGCGGCGCGCGGGATCGAATGCACGTGGCGCACCGACGACGACGGCGAACTGCTGCTGCGCACGCGCG AACGCTGCCAGGCCGTCGCGCGCCATCCACGCACCGGCGACCGCGTGTGGTTCAACCAGGCGAACCTGTTTCACCTGTCC GCGCTCGACGACGACATGCAGGAAGCGCTCGTCGATGCGGTCGGGGTCGAGAACGTGCCGCGCAACGTGTACTACGGCGA CGGCGCGCCGCTCGAGGCCGACGCGCTCGCGGAGATCCGCGGGGTGCTCGAGCGCCAGCGCATCGTGTTCCCGTGGCGCA CGGGCGACGTGCTGATGCTCGACAACATGCTGACCGCGCATGCGCGCGACCCGTTCGAAGGGCCGCGCAAGGTGGTCGTG GCGATGGCGCAGAGCTACACGGTCCCGCGCGCGACCGAACGGAGGACCGATGACGCGTAG
Upstream 100 bases:
>100_bases CCCGCGAGCCTGCGCCGCGCGATGGACGGCGAGCGCGCGACGCGCGCGTCGTGACCCGTTGCGCCGCGCTTGGCGGCGCG CCACCTGAAGAGGACGTTGC
Downstream 100 bases:
>100_bases TACCGCCGCGCTTGCCGCGCGCGGATTGACGGTGGGTTATCGCGACCATGTCGTGATCGACGGGCTGGACCTGTCGATCG CGGCCGGCCGCGTGACGGCG
Product: taurine catabolism dioxygenase TauD/TfdA
Products: NA
Alternate protein names: SyrP Protein; SyrP-Like Protein; Non-Ribosomal Peptide Synthetase; Regulatory Protein; Regulatory Protein B; Amino Acid Adenylation Domain Protein; Taurine Catabolism Dioxygenase TauD/TfdA Family; Amino Acid Adenylation Domain-Containing Protein; Pyoverdine Biosynthesis Regulatory Gene; Condensation Domain-Containing Protein; Taurine Catabolism Dioxygenase TauD TfdA Family; Taurine Catabolism Dioxygenase Taud/Tfda; SyrP-Like Regulatory Protein; NRPS-Like Protein; Peptide Synthase; Syringomycin Biosynthesis; Oxidoreductase; Clavaminic Acid Synthetase-Like Protein; Pyoverdine Biosynthesis Regulatory Gene SyrP-Like; Non Ribosomal Peptide Synthase Antibiotic Synthesis; Multi-Domain Non-Ribosomal Peptide Synthetase; Syrp Like Protein Albicidin Biosynthesis Regulation; Regulatory Protein SyrP-Like; Syringomycin Biosynthesis ; Pyoverdine Biosynthesis Regulatory Protein SyrP-Like; Syringomycin Synthesis Regulator SyrP
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MTLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHVPSIDAFQQFAASFGDPLIGY EYASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPLRIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQRE LLYVRNFGQGLDLPWQQSFGTDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLS ALDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLMLDNMLTAHARDPFEGPRKVVV AMAQSYTVPRATERRTDDA
Sequences:
>Translated_339_residues MTLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHVPSIDAFQQFAASFGDPLIGY EYASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPLRIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQRE LLYVRNFGQGLDLPWQQSFGTDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLS ALDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLMLDNMLTAHARDPFEGPRKVVV AMAQSYTVPRATERRTDDA >Mature_338_residues TLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHVPSIDAFQQFAASFGDPLIGYE YASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPLRIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQREL LYVRNFGQGLDLPWQQSFGTDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLSA LDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLMLDNMLTAHARDPFEGPRKVVVA MAQSYTVPRATERRTDDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37708; Mature: 37577
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHV CCEECCCCCCCCEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC PSIDAFQQFAASFGDPLIGYEYASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPL CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCE RIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQRELLYVRNFGQGLDLPWQQSFG EEEEEEEEECCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHEEEEECCCCCCCCCHHHCCC TDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLS CCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEE ALDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLML CCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCCEEEE DNMLTAHARDPFEGPRKVVVAMAQSYTVPRATERRTDDA CCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TLLSLPTLDDLRIEPGLPTVVSPRGADGMSIDEVAPLARAIAADTLERAGGVLFTGFHV CEECCCCCCCCEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC PSIDAFQQFAASFGDPLIGYEYASTPRSQVEGAVYTSTEYPPHRAIPLHNEQSYTREWPL CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCE RIWFHCALAAPKGGATPIADSRAVYRALDPALVARFEQRELLYVRNFGQGLDLPWQQSFG EEEEEEEEECCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHEEEEECCCCCCCCCHHHCCC TDEPAEVERMCAARGIECTWRTDDDGELLLRTRERCQAVARHPRTGDRVWFNQANLFHLS CCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEE ALDDDMQEALVDAVGVENVPRNVYYGDGAPLEADALAEIRGVLERQRIVFPWRTGDVLML CCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCCEEEE DNMLTAHARDPFEGPRKVVVAMAQSYTVPRATERRTDDA CCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA