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The map label for this gene is hofB [C]

Identifier: 115351458

GI number: 115351458

Start: 1548527

End: 1549891

Strand: Direct

Name: hofB [C]

Synonym: Bamb_1405

Alternate gene names: 115351458

Gene position: 1548527-1549891 (Clockwise)

Preceding gene: 115351457

Following gene: 115351459

Centisome position: 43.54

GC content: 64.69

Gene sequence:

>1365_bases
ATGGCACACGACATTCAATTTGCGGACGGCGCCGCGCCGTTCTCCCAGTCGCAGCAGTTCCATGACATCAAGAATGCCGC
GCACGAACATTTGCTGACGCGCATCGAGGAACTGGGGGCCGAGTTCGGTCGTTGGTCGCGCCAGGCAATCAACCAGTTCG
TCGACCTGGAAATCGACAGCTTCGTGCGTTTGCGGCGCATCCCGCTCAACGAGAACGAGGTCAGGACGATTGCCGAGGCG
CTGACCAAGGAGCTTGCCGGGTTCGGGCCGATCGAGGACTTGCTCGCCGATCCGCATGTCGAGGACATCCTGATCAACGG
CTACAACGACATCTACGTGTCGCGCCACGGGATCCTGGCCAAGCTGCCGATCCGCTTTACCGATAACGCGCACCTGCTGC
GTATCGTGCGACGCATCCTTGCGCCGATCGGCCGACGCCTGGACGAATCGAATCCGATGGTCGATGCGCGCCTGCCGGAC
GGCGGGCGTGTCAACGTGGTGATCGAGCCGCTGTCGATCGACGGGCCGGTCGTGTCGATCCGGAAATTCCGCAAGGATCC
GCTCAAGCCGGCCGATCTGCTCGGCAACGGCACGTTCAATGCGGAGCTCGGCGCGCTGCTCGAGGCGGCGGTCGAGGCTC
GCTGCAACATCCTCGTGTCGGGCGGCACGAGCTCGGGCAAGACTTCGCTGCTCAATGCGCTCGCGTTCCACATTCCCGAG
CCGGAACGCGTCGTGACGATCGAGGATACGGCCGAACTGTCGCTGAATCACCCGCATGTCGTGCGCCTCGAAAGCCGGCC
CGGTGGCTTCGACGGCACCGGCGTCGTGTCGATTCGCGATTTGCTGCGCAATACGTTGCGGATGCGCCCGGACCGGATCA
TCGTGGGCGAAGTGCGCGGCGGCGAGGTGCTCGAAATGCTGCAGGCCATGAACACGGGCCACGACGGCTCGATGGGAACC
GTGCATGCGAGTTCGCCGCGCGAGTGCCTCTATCGTCTCGAGATGCTGGCCGGCTTCGCCGGGTTCCAGGGCACCGAGTC
GAGCCTGCGCCGGCAGATCGCGAACGCGATCGACTTCATCGTGCAGATTGGCCGTCTGTCCAACGGCCGGCGCCGGATCC
TGTCGATTACCGAGGTAACCGGCCTGTCGGACAACATCATCGCGACGCAGGAACTGTATCGCTACGAGGCGCGCGTGACG
CCCGAAGGCGAAGAAGTCGACACCTGGGAATCGCTCGGCATTCATCCGCACTCGCCGAAGCTCGCCCGCTTCCGTCAGAC
ACTGCAGGGCGGCTTCGGCGGTAGCGGCGGCGGTGGCGGATTCGGCGGCGGATTCGGCCGCGGCGGCGGGGGTTTCAATG
TATAG

Upstream 100 bases:

>100_bases
GGAGCGACTGGCAGGCACGGTGGCGCCGGCAAAGAGCGCCGCTTCGGGCCTGTCCGTGCTCAAGCGTTTCATTCAACCTT
CGTCCAAGCGTTCGTAAGCG

Downstream 100 bases:

>100_bases
CGTGCTGGCAATGGCGCTTCTGCTCGTGGCCGCCGCGCTGATGCTGTGGCGGCACGGCGAGATGAAGCGCGATCGCGCCG
ACGTGCAGCGCTTCATCGAC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 453

Protein sequence:

>454_residues
MAHDIQFADGAAPFSQSQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRTIAEA
LTKELAGFGPIEDLLADPHVEDILINGYNDIYVSRHGILAKLPIRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPD
GGRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLGNGTFNAELGALLEAAVEARCNILVSGGTSSGKTSLLNALAFHIPE
PERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMLQAMNTGHDGSMGT
VHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAIDFIVQIGRLSNGRRRILSITEVTGLSDNIIATQELYRYEARVT
PEGEEVDTWESLGIHPHSPKLARFRQTLQGGFGGSGGGGGFGGGFGRGGGGFNV

Sequences:

>Translated_454_residues
MAHDIQFADGAAPFSQSQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRTIAEA
LTKELAGFGPIEDLLADPHVEDILINGYNDIYVSRHGILAKLPIRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPD
GGRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLGNGTFNAELGALLEAAVEARCNILVSGGTSSGKTSLLNALAFHIPE
PERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMLQAMNTGHDGSMGT
VHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAIDFIVQIGRLSNGRRRILSITEVTGLSDNIIATQELYRYEARVT
PEGEEVDTWESLGIHPHSPKLARFRQTLQGGFGGSGGGGGFGGGFGRGGGGFNV
>Mature_453_residues
AHDIQFADGAAPFSQSQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRTIAEAL
TKELAGFGPIEDLLADPHVEDILINGYNDIYVSRHGILAKLPIRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDG
GRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLGNGTFNAELGALLEAAVEARCNILVSGGTSSGKTSLLNALAFHIPEP
ERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMLQAMNTGHDGSMGTV
HASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAIDFIVQIGRLSNGRRRILSITEVTGLSDNIIATQELYRYEARVTP
EGEEVDTWESLGIHPHSPKLARFRQTLQGGFGGSGGGGGFGGGFGRGGGGFNV

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 49587; Mature: 49456

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHDIQFADGAAPFSQSQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FVRLRRIPLNENEVRTIAEALTKELAGFGPIEDLLADPHVEDILINGYNDIYVSRHGILA
HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHEEECCCCEEEEECCCEEE
KLPIRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRVNVVIEPLSIDGPVVSI
EECEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHH
RKFRKDPLKPADLLGNGTFNAELGALLEAAVEARCNILVSGGTSSGKTSLLNALAFHIPE
HHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCC
PERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRG
CCEEEEEECCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
GEVLEMLQAMNTGHDGSMGTVHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAIDFI
CHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VQIGRLSNGRRRILSITEVTGLSDNIIATQELYRYEARVTPEGEEVDTWESLGIHPHSPK
HHHHCCCCCCCEEEEEEHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCH
LARFRQTLQGGFGGSGGGGGFGGGFGRGGGGFNV
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AHDIQFADGAAPFSQSQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FVRLRRIPLNENEVRTIAEALTKELAGFGPIEDLLADPHVEDILINGYNDIYVSRHGILA
HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHEEECCCCEEEEECCCEEE
KLPIRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRVNVVIEPLSIDGPVVSI
EECEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHH
RKFRKDPLKPADLLGNGTFNAELGALLEAAVEARCNILVSGGTSSGKTSLLNALAFHIPE
HHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCC
PERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRG
CCEEEEEECCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
GEVLEMLQAMNTGHDGSMGTVHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAIDFI
CHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VQIGRLSNGRRRILSITEVTGLSDNIIATQELYRYEARVTPEGEEVDTWESLGIHPHSPK
HHHHCCCCCCCEEEEEEHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCH
LARFRQTLQGGFGGSGGGGGFGGGFGRGGGGFNV
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]