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The map label for this gene is rbfA

Identifier: 115351436

GI number: 115351436

Start: 1521088

End: 1521486

Strand: Direct

Name: rbfA

Synonym: Bamb_1383

Alternate gene names: 115351436

Gene position: 1521088-1521486 (Clockwise)

Preceding gene: 115351435

Following gene: 115351437

Centisome position: 42.77

GC content: 59.15

Gene sequence:

>399_bases
ATGTCCAGGAAACGTACTTCCCCCAATCGCAACGTTCAGATCGCCGACCAGATTCAGCGCGATCTGTCCGAACTCATCAT
GCGCGAGGTCAAAGACCCGCGCATCGGTATCGTAACCATCCAGAGCGTGGAGCTCACGCCGGACTACGCGCACGCAAAGA
TCTATTTCACGGCGCTCACCGGCGATCCGGACAAGACGCAGGAAGCGCTGAACCACGCGTCGGGTCACCTTCACAACCTG
CTGTTCAAGCGCCTGCATATTCATACGGTGCCGACGCTGCATTTCCATTACGACCAGACGATCGAGAAGGCCGTGGAAAT
GTCGCGCCTCATCAAGGAGGCCAACTCGACGCGCGCGAAGGACGACGACGAAGCCGACGCGCCCGCGAAGGACGATTGA

Upstream 100 bases:

>100_bases
CTCGTGGGCGGGGCAGGCTTGTGGGCCTGTCCCGCCCATTTTCATGGCGGCGCGCCAGACGGCGGCCGCATTATCCTGAT
AAACGAATCAGGGATGGATC

Downstream 100 bases:

>100_bases
GCGCGCGCGCCCTATGACGAATGCAGCCTCCCAGCGTCCGCGCGTGCCCCGGCGCGCGCTGGACGGCGTCCTCCTGCTCG
ACAAGCCGGTCGGCCTGTCG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKIYFTALTGDPDKTQEALNHASGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAKDDDEADAPAKDD

Sequences:

>Translated_132_residues
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKIYFTALTGDPDKTQEALNHASGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAKDDDEADAPAKDD
>Mature_131_residues
SRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKIYFTALTGDPDKTQEALNHASGHLHNLL
FKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAKDDDEADAPAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=35.3448275862069, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_BURA4 (B1YP37)

Other databases:

- EMBL:   CP001025
- RefSeq:   YP_001808127.1
- ProteinModelPortal:   B1YP37
- SMR:   B1YP37
- GeneID:   6176554
- GenomeReviews:   CP001025_GR
- KEGG:   bac:BamMC406_1423
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   BAMB398577:BAMMC406_1423-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15066; Mature: 14935

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKIYFTALT
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GDPDKTQEALNHASGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCC
DDDEADAPAKDD
CCCCCCCCCCCC
>Mature Secondary Structure 
SRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKIYFTALT
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GDPDKTQEALNHASGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCC
DDDEADAPAKDD
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA