Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351377

Identifier: 115351377

GI number: 115351377

Start: 1455740

End: 1456222

Strand: Direct

Name: 115351377

Synonym: Bamb_1324

Alternate gene names: NA

Gene position: 1455740-1456222 (Clockwise)

Preceding gene: 115351376

Following gene: 115351378

Centisome position: 40.93

GC content: 57.97

Gene sequence:

>483_bases
ATGCCTGTGGAATGTACTTTCTCGTTAAACCGTCAGCGCTCGTCCGTCCTGCATTGTGCGGGTTTTGGGGCAGTCGCCGC
ATTCAGCGGCAACGGTCGATATGTCAATGATCCGAATTCGACAACAGTTCCCAACGACGGGCCGTTGCCGGCCGGTGTTT
ACTACATCGTGGATCGCCAGAGCGGTGGACGCATGGGGTGGTTGAACGACTTTCGCTCCGATCTGCTTGCAGGTACTCAT
CGCGCGGATTGGTTCGCGTTGTATCGCAACGATGGCGTGATCGACGACTGGACGTCGCTCAACGGCATTCGGCGTGGCCA
CTTCCGGTTGCATCCCGTCGGATACTGGGGCATCAGCGAAGGCTGCATCACACTGCCGAACAAAACCCAGTTCGATGCGC
TTCGCAAGTTCCTCAAGTCGCAGGCCGTCGGCACGATTCCAGGCACCGGGATGAAGTACTACGGTCGAGTGGTCGTCCAA
TGA

Upstream 100 bases:

>100_bases
GGATTAAGCTCTCGCGGCTGCCGGGGAAGTTGGGGCAGTCGGGGCGATCGCACGTCGCACGCGGTCGCATCAAAAAAATA
ACTATCCGGAGAGGGCCAGA

Downstream 100 bases:

>100_bases
AAGCGCTTCTGCGTCTGCTTGCCGCGATCGCTTTGACGATCCCGGTCTATCTCGGCCTGGCGAATTCACCTCTGGATGAA
TGGTTTCAAAGCGGCGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MPVECTFSLNRQRSSVLHCAGFGAVAAFSGNGRYVNDPNSTTVPNDGPLPAGVYYIVDRQSGGRMGWLNDFRSDLLAGTH
RADWFALYRNDGVIDDWTSLNGIRRGHFRLHPVGYWGISEGCITLPNKTQFDALRKFLKSQAVGTIPGTGMKYYGRVVVQ

Sequences:

>Translated_160_residues
MPVECTFSLNRQRSSVLHCAGFGAVAAFSGNGRYVNDPNSTTVPNDGPLPAGVYYIVDRQSGGRMGWLNDFRSDLLAGTH
RADWFALYRNDGVIDDWTSLNGIRRGHFRLHPVGYWGISEGCITLPNKTQFDALRKFLKSQAVGTIPGTGMKYYGRVVVQ
>Mature_159_residues
PVECTFSLNRQRSSVLHCAGFGAVAAFSGNGRYVNDPNSTTVPNDGPLPAGVYYIVDRQSGGRMGWLNDFRSDLLAGTHR
ADWFALYRNDGVIDDWTSLNGIRRGHFRLHPVGYWGISEGCITLPNKTQFDALRKFLKSQAVGTIPGTGMKYYGRVVVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17689; Mature: 17558

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVECTFSLNRQRSSVLHCAGFGAVAAFSGNGRYVNDPNSTTVPNDGPLPAGVYYIVDRQ
CCEEEEEECCCCCCCEEEECCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEEEEECC
SGGRMGWLNDFRSDLLAGTHRADWFALYRNDGVIDDWTSLNGIRRGHFRLHPVGYWGISE
CCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHCCCEECCCEEEEEEEECCCCC
GCITLPNKTQFDALRKFLKSQAVGTIPGTGMKYYGRVVVQ
CEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure 
PVECTFSLNRQRSSVLHCAGFGAVAAFSGNGRYVNDPNSTTVPNDGPLPAGVYYIVDRQ
CEEEEEECCCCCCCEEEECCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEEEEECC
SGGRMGWLNDFRSDLLAGTHRADWFALYRNDGVIDDWTSLNGIRRGHFRLHPVGYWGISE
CCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHCCCEECCCEEEEEEEECCCCC
GCITLPNKTQFDALRKFLKSQAVGTIPGTGMKYYGRVVVQ
CEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA