| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is mglC [H]
Identifier: 115351359
GI number: 115351359
Start: 1432818
End: 1433843
Strand: Direct
Name: mglC [H]
Synonym: Bamb_1306
Alternate gene names: 115351359
Gene position: 1432818-1433843 (Clockwise)
Preceding gene: 115351358
Following gene: 115351360
Centisome position: 40.29
GC content: 67.06
Gene sequence:
>1026_bases ATGGGCAACCTGAACCCGGTCGCGGACGCGCAGTCCCTGACGATCAAGACGCGGCACGCGAAGTGGCCGCCCGAACTGAG CATCTTCCTGGTGCTGGTGGGCATCAGCCTGTTCTTCGAGGTGATCGGCTGGCTCGTCGTCGGCCAGAGCTTCCTGTTCA ACGCGGAGCGGCTCGAGATCATCGTGCTGCAGATGGCCGTGATCGGCATCATCGCGGTCGGTGTGAACCTCGTGATCATC ACCAGCGGGATCGACCTGTCGTCGGGCTCGGTCGTCGCTGCGGCGGCCGTGGTATCGGCCAGCCTCGCGCAGGTGTCCGA TTTTCCGCGCGCGGTGTTCCCGCACCTGACCGACCTGCCGGTCATCTGGCCGGTGCTGGCCGGCGTGTGCGTCGGGCTGC TGGTCGGCCTGCTGAACGGCTCGCTGATCGCGCTGACGGGCATCCCGCCGTTCATCGCGACGCTCGGCACGATGGTCGCC GCGCGCGGCTTCGCGAAGTGGTTCACCAACGGCATGCCGGTGTCGATGCTGACCGACCCGTTCGCGGCGATCGGCGCGGG CGCGAACCCGGTGATCATCTTTCTCGTGGTGGCCGCGATCTTCCACGTCGTGCTGCGCTACACGCGCTTCGGCAAGTACA CGTATGCGATCGGTGCGAACCGCCACGCGGCCGTCGTGTCGGGCATCAACGTGACGCGCCACCTGGTGTTCGTCTATGCG ATCGCGGGCCTGTTGAGCGGGATTGCCGGCACCGTGACGGCCGCGCGTGCGATCTCCGGCCAGTCGGGCATGGGCGTGAT GTACGAGCTCGACGCGATCGCGGCCGTCGTGATCGGCGGTACGTCGCTGTCGGGCGGCCTCGGGCGCGTGACCGGCACCG TGATCGGCGTGCTGATTCTCGGCGTGATGACCTCGGGCTTCACGTTCATCCGGATCGACGCGTACTACCAGGAGATGGTC AAGGGCGCGATCATCGTCGCGGCCGTGATCGCCGATCAGTACCGCAACAAGAAGTCGCGCCGCTGA
Upstream 100 bases:
>100_bases AAGGCCGGATGACCGGCATCGTCGAACGCAAGGACGCCGACCAGGTCCGCATCATGGACCTGGCCTCGCGCTGAGCCGAA ACAAGATTGGAGACAAAGCA
Downstream 100 bases:
>100_bases GCGGCTGATACCGATACCCACGTCATTCGGAAAGAAGATGAAGATCGCTCTGGATCCCTACATGATTCGCCACCTGCCGC TCGACCGGTTGCCGCACGCG
Product: inner-membrane translocator
Products: ADP; phosphate; ribose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MGNLNPVADAQSLTIKTRHAKWPPELSIFLVLVGISLFFEVIGWLVVGQSFLFNAERLEIIVLQMAVIGIIAVGVNLVII TSGIDLSSGSVVAAAAVVSASLAQVSDFPRAVFPHLTDLPVIWPVLAGVCVGLLVGLLNGSLIALTGIPPFIATLGTMVA ARGFAKWFTNGMPVSMLTDPFAAIGAGANPVIIFLVVAAIFHVVLRYTRFGKYTYAIGANRHAAVVSGINVTRHLVFVYA IAGLLSGIAGTVTAARAISGQSGMGVMYELDAIAAVVIGGTSLSGGLGRVTGTVIGVLILGVMTSGFTFIRIDAYYQEMV KGAIIVAAVIADQYRNKKSRR
Sequences:
>Translated_341_residues MGNLNPVADAQSLTIKTRHAKWPPELSIFLVLVGISLFFEVIGWLVVGQSFLFNAERLEIIVLQMAVIGIIAVGVNLVII TSGIDLSSGSVVAAAAVVSASLAQVSDFPRAVFPHLTDLPVIWPVLAGVCVGLLVGLLNGSLIALTGIPPFIATLGTMVA ARGFAKWFTNGMPVSMLTDPFAAIGAGANPVIIFLVVAAIFHVVLRYTRFGKYTYAIGANRHAAVVSGINVTRHLVFVYA IAGLLSGIAGTVTAARAISGQSGMGVMYELDAIAAVVIGGTSLSGGLGRVTGTVIGVLILGVMTSGFTFIRIDAYYQEMV KGAIIVAAVIADQYRNKKSRR >Mature_340_residues GNLNPVADAQSLTIKTRHAKWPPELSIFLVLVGISLFFEVIGWLVVGQSFLFNAERLEIIVLQMAVIGIIAVGVNLVIIT SGIDLSSGSVVAAAAVVSASLAQVSDFPRAVFPHLTDLPVIWPVLAGVCVGLLVGLLNGSLIALTGIPPFIATLGTMVAA RGFAKWFTNGMPVSMLTDPFAAIGAGANPVIIFLVVAAIFHVVLRYTRFGKYTYAIGANRHAAVVSGINVTRHLVFVYAI AGLLSGIAGTVTAARAISGQSGMGVMYELDAIAAVVIGGTSLSGGLGRVTGTVIGVLILGVMTSGFTFIRIDAYYQEMVK GAIIVAAVIADQYRNKKSRR
Specific function: Part of the binding-protein-dependent transport system for galactoside. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1172
COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790191, Length=296, Percent_Identity=39.8648648648649, Blast_Score=165, Evalue=5e-42, Organism=Escherichia coli, GI1788471, Length=289, Percent_Identity=41.522491349481, Blast_Score=151, Evalue=7e-38, Organism=Escherichia coli, GI1788896, Length=347, Percent_Identity=32.5648414985591, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI145693152, Length=285, Percent_Identity=37.8947368421053, Blast_Score=141, Evalue=5e-35, Organism=Escherichia coli, GI1790524, Length=293, Percent_Identity=34.1296928327645, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1789992, Length=373, Percent_Identity=30.0268096514745, Blast_Score=116, Evalue=3e-27, Organism=Escherichia coli, GI145693214, Length=321, Percent_Identity=34.2679127725857, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87082395, Length=265, Percent_Identity=35.8490566037736, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1787794, Length=295, Percent_Identity=29.8305084745763, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787793, Length=294, Percent_Identity=29.9319727891156, Blast_Score=79, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 35596; Mature: 35465
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNLNPVADAQSLTIKTRHAKWPPELSIFLVLVGISLFFEVIGWLVVGQSFLFNAERLEI CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH IVLQMAVIGIIAVGVNLVIITSGIDLSSGSVVAAAAVVSASLAQVSDFPRAVFPHLTDLP HHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCH VIWPVLAGVCVGLLVGLLNGSLIALTGIPPFIATLGTMVAARGFAKWFTNGMPVSMLTDP HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC FAAIGAGANPVIIFLVVAAIFHVVLRYTRFGKYTYAIGANRHAAVVSGINVTRHLVFVYA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHEECCHHHHHHHHHHH IAGLLSGIAGTVTAARAISGQSGMGVMYELDAIAAVVIGGTSLSGGLGRVTGTVIGVLIL HHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHEECCCCCCCCHHHHHHHHHHHHHH GVMTSGFTFIRIDAYYQEMVKGAIIVAAVIADQYRNKKSRR HHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GNLNPVADAQSLTIKTRHAKWPPELSIFLVLVGISLFFEVIGWLVVGQSFLFNAERLEI CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH IVLQMAVIGIIAVGVNLVIITSGIDLSSGSVVAAAAVVSASLAQVSDFPRAVFPHLTDLP HHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCH VIWPVLAGVCVGLLVGLLNGSLIALTGIPPFIATLGTMVAARGFAKWFTNGMPVSMLTDP HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC FAAIGAGANPVIIFLVVAAIFHVVLRYTRFGKYTYAIGANRHAAVVSGINVTRHLVFVYA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHEECCHHHHHHHHHHH IAGLLSGIAGTVTAARAISGQSGMGVMYELDAIAAVVIGGTSLSGGLGRVTGTVIGVLIL HHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHEECCCCCCCCHHHHHHHHHHHHHH GVMTSGFTFIRIDAYYQEMVKGAIIVAAVIADQYRNKKSRR HHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; ribose [Periplasm]; H2O [C]
Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]