Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351333

Identifier: 115351333

GI number: 115351333

Start: 1401995

End: 1402381

Strand: Direct

Name: 115351333

Synonym: Bamb_1280

Alternate gene names: NA

Gene position: 1401995-1402381 (Clockwise)

Preceding gene: 115351332

Following gene: 115351334

Centisome position: 39.42

GC content: 65.89

Gene sequence:

>387_bases
ATGTCGATGCGTGCATCCCTTTCCATCGTCACGCGCGTGCTGGCCGGCGCCGCGTGCGCAGCCGCGATGCTGCCCGCCCA
CGCACAAAGCAACCTGGGCTTCCTGAACGACACGCCGCTGACCTACTTCAGCAAGACCGACCGCGCGTCGCTGACCAAGG
CCGTCGCGCAGGTGCGCGACGAAGGCAAGGACGGCGAAACCACGACGTGGCAGAGCAACGGCCGCGGCACGCAGATCGAT
GCGAAGCTCACGCCGTCGACGTCCGAAACCGACGGCAAGACCTGCCGCGAAATCGCGACCGAAATCACCGCGAAGGGCCA
GTCGATGACGCTCAAGCCGGTCTTCTGCAAGACCGCCGCGGGCAAGTGGCAACTGCAGAAACGCTGA

Upstream 100 bases:

>100_bases
TGCTCGCTCGCTGACGGGCGTGGCGCGTGCCGGATGGCCGGCCCCCGGTTCGCCGGCCGCGCGCCACGCCGTTCGATCGA
ACATCCAAGGAGAACAACAC

Downstream 100 bases:

>100_bases
GCGCGGTGCGATGAAGCGCAGTGGTGCGCCGCGCACGGTATCGTGCGGCGTCGTGATTCTCGACGGGGCCGGCCGCGTAT
TCCTCGCGCATGCGACGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSMRASLSIVTRVLAGAACAAAMLPAHAQSNLGFLNDTPLTYFSKTDRASLTKAVAQVRDEGKDGETTTWQSNGRGTQID
AKLTPSTSETDGKTCREIATEITAKGQSMTLKPVFCKTAAGKWQLQKR

Sequences:

>Translated_128_residues
MSMRASLSIVTRVLAGAACAAAMLPAHAQSNLGFLNDTPLTYFSKTDRASLTKAVAQVRDEGKDGETTTWQSNGRGTQID
AKLTPSTSETDGKTCREIATEITAKGQSMTLKPVFCKTAAGKWQLQKR
>Mature_127_residues
SMRASLSIVTRVLAGAACAAAMLPAHAQSNLGFLNDTPLTYFSKTDRASLTKAVAQVRDEGKDGETTTWQSNGRGTQIDA
KLTPSTSETDGKTCREIATEITAKGQSMTLKPVFCKTAAGKWQLQKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13697; Mature: 13566

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMRASLSIVTRVLAGAACAAAMLPAHAQSNLGFLNDTPLTYFSKTDRASLTKAVAQVRD
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHH
EGKDGETTTWQSNGRGTQIDAKLTPSTSETDGKTCREIATEITAKGQSMTLKPVFCKTAA
CCCCCCCCEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEECHHEEECCC
GKWQLQKR
CCEEECCC
>Mature Secondary Structure 
SMRASLSIVTRVLAGAACAAAMLPAHAQSNLGFLNDTPLTYFSKTDRASLTKAVAQVRD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHH
EGKDGETTTWQSNGRGTQIDAKLTPSTSETDGKTCREIATEITAKGQSMTLKPVFCKTAA
CCCCCCCCEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEECHHEEECCC
GKWQLQKR
CCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA