| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115351330
Identifier: 115351330
GI number: 115351330
Start: 1397023
End: 1398567
Strand: Direct
Name: 115351330
Synonym: Bamb_1277
Alternate gene names: NA
Gene position: 1397023-1398567 (Clockwise)
Preceding gene: 115351329
Following gene: 115351332
Centisome position: 39.28
GC content: 67.38
Gene sequence:
>1545_bases ATGATCGGGCGAGAGGCGGGCAGGCACCGGACACGTCACGGCCGCCGCTTCGCGCGGGCCGCACGCCTGTCGATCGTCGC GGGGCTGTTGGTCGCGGGCGCCGACGCGGCGTTCGCGCAGACGCCGGCAGCATCGACCTCGACGCCGGCGCAAGAACCGG CGCCGGCTTCGACTGCGCCATCGGTTTCTACATCGGCAACGACACCCGTGGCGACCACTGCATCGACCTGCACGGCCAAG CGGCCGACGGTGCTGTTCAACCGCTGGCAGGAAGACTGGTCGGTGCTCGCGAATCCGTGTGTGCCGCGCGCGCCGCTCGA CGGGCTGAAATACATTCCGCTCGGCAATGATCCGTCATCCTATCTTTCGCTCGGCGTGAACCTGCGCGAGCGGCTGGAGA CCAACGACGCGCCGCTGTTCGGGATCGGCTCCGCGCAATCGGATACCTACCTGATCCAGCGCGTCGAGGTGCATGCCGAT GCGCATCTCGGCCAGCACTGGCAGTTCTTCGTGCAATTGCAGGACGCGCGCGCGTTCGGCAAGAACACGGTGTCGCCGGT CGACCGGAACCCGCTCGATCTCGAGCAGGCGTTCGCGACCTACACGGGTGAGCTCGGCGGCGGCACGGTCAAGGTCCGCG TCGGCCGGCAGGAGATGGCGTTCGACTTGCAGCGCTTCATCGCCGCGCGCGACGGCCCGAACGTGCGGCAATCGTTCGAT GCGGTGTGGGCCGATTACGAATACGGGAAGTGGCGCTTCATCGGCTATGCGACGCAGCCGGTGCAGAACCGCAACGCATC CGATTTCGACGACGTGTCCAATCGCAATCTCACGTTCAGCGGCTTGCGCTTCGAGCGGCAGTCGATCGGGCCGGGCGACC TGTCCGGCTACTGGTCGCGGTACAACCGCAAGAACGCGCGCTTTCTCGATGCGAGCGGCCCCGAGCATCGCGACGTGTGG GATCTGCGCTACTCGGGCACGCAGGGCCGTTTCGACTGGGATCTCGAGACGATGCTGCAGAGCGGGACGGTCGGCAACAA CACGATCGGCGCGTGGGCCGTCGGCTCGATCGCGGGCTACAAGCTCGACATGCCGTGGTCCCCACGTGTTGCGCTCCAGG TCGATGCGGCATCGGGCGACCGGCATCCGCACGACGGCCGCGTCGGCACCTTCAACCCGCTGTTTCCGAACGGCTATTAC TTCACGCTGGCCGGCTTCACGGGCTACTCGAACCTGATCCACGTGAAGCCGTCGGTGACGCTGAAGCCGGCGCCGAACCT GTCGCTGCTCGGCGCACTCGGCTTCCAGTGGCGCGAGACGACCGGCGACGCCGTCTATCAGCAGGCGAACGTCGCGGTGC CTGGCACCGCCGGCAAGGGCGGCTCATGGACGGGGATGTACGTGCAGCTGCGCGCGGACTGGACGATCGCCGCGAACCTG ATCGGCGCGGTCGAGGCCGTGCATTTCCAGGTCGGCGACGCGATCCGGCAGGCGGGCGGGCACAACGCGGACTACGTCGG TGTTGAGCTGAAGTATGGGTGGTAG
Upstream 100 bases:
>100_bases GTTACATCGGCTTTGCGGCGCTGCTCGCGCCGGTGTGCGCGCTGGCGACGCTTGCGCTGGGTTCGTCACAAGCGGCCGCG CCGGCCACGCAGGAGCGCGC
Downstream 100 bases:
>100_bases CGCGCACGGCGCATGAAAAAGGGCGACCCCGCGTGAGCAGGGTCGCCCTTCGTTCGTCCGGGCCGGCGGCATGGCCGGCC CGTTCGCGGTGATGGCGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 514; Mature: 514
Protein sequence:
>514_residues MIGREAGRHRTRHGRRFARAARLSIVAGLLVAGADAAFAQTPAASTSTPAQEPAPASTAPSVSTSATTPVATTASTCTAK RPTVLFNRWQEDWSVLANPCVPRAPLDGLKYIPLGNDPSSYLSLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHAD AHLGQHWQFFVQLQDARAFGKNTVSPVDRNPLDLEQAFATYTGELGGGTVKVRVGRQEMAFDLQRFIAARDGPNVRQSFD AVWADYEYGKWRFIGYATQPVQNRNASDFDDVSNRNLTFSGLRFERQSIGPGDLSGYWSRYNRKNARFLDASGPEHRDVW DLRYSGTQGRFDWDLETMLQSGTVGNNTIGAWAVGSIAGYKLDMPWSPRVALQVDAASGDRHPHDGRVGTFNPLFPNGYY FTLAGFTGYSNLIHVKPSVTLKPAPNLSLLGALGFQWRETTGDAVYQQANVAVPGTAGKGGSWTGMYVQLRADWTIAANL IGAVEAVHFQVGDAIRQAGGHNADYVGVELKYGW
Sequences:
>Translated_514_residues MIGREAGRHRTRHGRRFARAARLSIVAGLLVAGADAAFAQTPAASTSTPAQEPAPASTAPSVSTSATTPVATTASTCTAK RPTVLFNRWQEDWSVLANPCVPRAPLDGLKYIPLGNDPSSYLSLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHAD AHLGQHWQFFVQLQDARAFGKNTVSPVDRNPLDLEQAFATYTGELGGGTVKVRVGRQEMAFDLQRFIAARDGPNVRQSFD AVWADYEYGKWRFIGYATQPVQNRNASDFDDVSNRNLTFSGLRFERQSIGPGDLSGYWSRYNRKNARFLDASGPEHRDVW DLRYSGTQGRFDWDLETMLQSGTVGNNTIGAWAVGSIAGYKLDMPWSPRVALQVDAASGDRHPHDGRVGTFNPLFPNGYY FTLAGFTGYSNLIHVKPSVTLKPAPNLSLLGALGFQWRETTGDAVYQQANVAVPGTAGKGGSWTGMYVQLRADWTIAANL IGAVEAVHFQVGDAIRQAGGHNADYVGVELKYGW >Mature_514_residues MIGREAGRHRTRHGRRFARAARLSIVAGLLVAGADAAFAQTPAASTSTPAQEPAPASTAPSVSTSATTPVATTASTCTAK RPTVLFNRWQEDWSVLANPCVPRAPLDGLKYIPLGNDPSSYLSLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHAD AHLGQHWQFFVQLQDARAFGKNTVSPVDRNPLDLEQAFATYTGELGGGTVKVRVGRQEMAFDLQRFIAARDGPNVRQSFD AVWADYEYGKWRFIGYATQPVQNRNASDFDDVSNRNLTFSGLRFERQSIGPGDLSGYWSRYNRKNARFLDASGPEHRDVW DLRYSGTQGRFDWDLETMLQSGTVGNNTIGAWAVGSIAGYKLDMPWSPRVALQVDAASGDRHPHDGRVGTFNPLFPNGYY FTLAGFTGYSNLIHVKPSVTLKPAPNLSLLGALGFQWRETTGDAVYQQANVAVPGTAGKGGSWTGMYVQLRADWTIAANL IGAVEAVHFQVGDAIRQAGGHNADYVGVELKYGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56078; Mature: 56078
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGREAGRHRTRHGRRFARAARLSIVAGLLVAGADAAFAQTPAASTSTPAQEPAPASTAP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCC SVSTSATTPVATTASTCTAKRPTVLFNRWQEDWSVLANPCVPRAPLDGLKYIPLGNDPSS CCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHH YLSLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHADAHLGQHWQFFVQLQDARAFG HHEECCCHHHHHCCCCCCEEEECCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECHHHCC KNTVSPVDRNPLDLEQAFATYTGELGGGTVKVRVGRQEMAFDLQRFIAARDGPNVRQSFD CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHH AVWADYEYGKWRFIGYATQPVQNRNASDFDDVSNRNLTFSGLRFERQSIGPGDLSGYWSR HHHCCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCEEEEEEEEECCCCCCCCHHHHHHH YNRKNARFLDASGPEHRDVWDLRYSGTQGRFDWDLETMLQSGTVGNNTIGAWAVGSIAGY HCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCE KLDMPWSPRVALQVDAASGDRHPHDGRVGTFNPLFPNGYYFTLAGFTGYSNLIHVKPSVT EECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCEE LKPAPNLSLLGALGFQWRETTGDAVYQQANVAVPGTAGKGGSWTGMYVQLRADWTIAANL ECCCCCEEEEECCCCEEECCCCHHHHHHCCEECCCCCCCCCCEEEEEEEEEECCEEEHHH IGAVEAVHFQVGDAIRQAGGHNADYVGVELKYGW HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC >Mature Secondary Structure MIGREAGRHRTRHGRRFARAARLSIVAGLLVAGADAAFAQTPAASTSTPAQEPAPASTAP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCC SVSTSATTPVATTASTCTAKRPTVLFNRWQEDWSVLANPCVPRAPLDGLKYIPLGNDPSS CCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHH YLSLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHADAHLGQHWQFFVQLQDARAFG HHEECCCHHHHHCCCCCCEEEECCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECHHHCC KNTVSPVDRNPLDLEQAFATYTGELGGGTVKVRVGRQEMAFDLQRFIAARDGPNVRQSFD CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHH AVWADYEYGKWRFIGYATQPVQNRNASDFDDVSNRNLTFSGLRFERQSIGPGDLSGYWSR HHHCCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCEEEEEEEEECCCCCCCCHHHHHHH YNRKNARFLDASGPEHRDVWDLRYSGTQGRFDWDLETMLQSGTVGNNTIGAWAVGSIAGY HCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCE KLDMPWSPRVALQVDAASGDRHPHDGRVGTFNPLFPNGYYFTLAGFTGYSNLIHVKPSVT EECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCEE LKPAPNLSLLGALGFQWRETTGDAVYQQANVAVPGTAGKGGSWTGMYVQLRADWTIAANL ECCCCCEEEEECCCCEEECCCCHHHHHHCCEECCCCCCCCCCEEEEEEEEEECCEEEHHH IGAVEAVHFQVGDAIRQAGGHNADYVGVELKYGW HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA