Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351245

Identifier: 115351245

GI number: 115351245

Start: 1306349

End: 1307692

Strand: Direct

Name: 115351245

Synonym: Bamb_1192

Alternate gene names: NA

Gene position: 1306349-1307692 (Clockwise)

Preceding gene: 115351244

Following gene: 115351246

Centisome position: 36.73

GC content: 60.79

Gene sequence:

>1344_bases
ATGGAGTTCTCCAATCACACGCCTTTCCCGGCATTGGCGTTCGAATCGTTTGCGCCGGACGGCGGATCCTTCCATACCGT
TGTATTGCGGCAGACTTTCGATTTGCGCAATGGCTCATTGGTGCTGGCGCAGAAGCAGACCCCGCTCTCGACATCAGATC
GCTTCCACGGCGAGCCGAATCAGTCCAGCGTGGCAGAGGAAAGCGATCTCGCGCCATATAAACCGCTTTGCGATGTACTG
ATCAACGGGACGGCCTACGCGCCGCAGGGGCGATCGGTGCCGCGCTTCATGGCGGGTGTTCGAATTGTATCGGCGCCCAT
GCGATCCGAAGACGACGCGGGTGTGCCGACGACGAAAGTCTTGCTAGATCGCAGGCTGTCCGTGACAGGCCAAAGGTACT
TTGCTCGGCGGTCGATGCTTGGTCGAAGCATGAATCGACTCGTGAAGATCGCCTCGCTCGGCATCGTGCGTCCCGTCGAC
TGGTGGCTGACGCCGCCCGAGCCAATCGCAGCGCTGCCTATGCGTTACGAATACGCATGGGGCGGGCAGTGTCGGGTCGA
CGCGCAGGATCAGGCTGCGAAACGTGTGCCTAAGGCATCTCGGCTCAATGACAAACAGCTGGCTGCACATCCCGATCAAG
ACAGCGTTCCGGTGGCGCATACGGCCTGCGAAGACAATCCGGTCGGTCTGGGGTTTGCTGAGCGTTGGTTCCTTACCGCG
ACGAAGCAGCAAAAGGTCGCTGCGCCGCAGATCGAAGCCAGCAGTGAACCCATCTCGATACAAGCATGGCTAGCAGCTTC
GAATGGGCAGCCGCATCCGTCGCTGCATCCGGTCGGCTTCGGTATCGTCGGGAAAGCGTGGGGATCGAGGCGTGAGCTTG
CTGGCACCTACGATGATCAGTGGCTCGCTGAATGCCATCCGGGCTTACCAGACGACTTTCAGTTCAGGTACTGGAACGGC
GCGCATCCGCTGATGCAGGTGCCGCACCTGAAGGGTAACGAGACGATCGTGCTGACGAATCTTGTTCCCGCCGGCACGCC
CGGATCGACCGTCGACGAGCGTGGCAATACGATCCTGCGCATCGCCTTGCCAGGACATCTACCGATGGGATGGGTCTACA
CCGACCAGTCGCTCAAGTTCGCGCCGCTGCTGCTCGATACGCTGTCTGTCGACGTGTCAGATACGGCGAAGCCCGTGGTG
ACGTTGGTCTGGCGTGCGACGCTGATGAAATCCGCGCGTGCGCAGCGCTTTGAGGCAAGGTTTGTGAACCATGCCGACTT
GGAGCGACTTGCCGTGCGTTCGCCGGCAAGCTCGATCGGATCAGCGGGAGTGCGGCATGGCTGA

Upstream 100 bases:

>100_bases
ACGGACACATCACGCTGCGCGGCACGCAACTGTTGATCGAGGGCTCTGGGCCGGTGCAGATCAACGGCAAGGATGTCGAC
GTCAACTGACGGGAGCGGCG

Downstream 100 bases:

>100_bases
ACCACTGACTTTCACCATCACCGGCGACGCAGGCGACGTTTTCCGTGAGCACTTCAACATCCAGAGTGTCGAGCAGGCCC
GCGACGCGGTGAAGAATCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPNQSSVAEESDLAPYKPLCDVL
INGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKVLLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVD
WWLTPPEPIAALPMRYEYAWGGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA
TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQWLAECHPGLPDDFQFRYWNG
AHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILRIALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVV
TLVWRATLMKSARAQRFEARFVNHADLERLAVRSPASSIGSAGVRHG

Sequences:

>Translated_447_residues
MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPNQSSVAEESDLAPYKPLCDVL
INGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKVLLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVD
WWLTPPEPIAALPMRYEYAWGGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA
TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQWLAECHPGLPDDFQFRYWNG
AHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILRIALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVV
TLVWRATLMKSARAQRFEARFVNHADLERLAVRSPASSIGSAGVRHG
>Mature_447_residues
MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPNQSSVAEESDLAPYKPLCDVL
INGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKVLLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVD
WWLTPPEPIAALPMRYEYAWGGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA
TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQWLAECHPGLPDDFQFRYWNG
AHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILRIALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVV
TLVWRATLMKSARAQRFEARFVNHADLERLAVRSPASSIGSAGVRHG

Specific function: Unknown

COG id: COG5351

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48959; Mature: 48959

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPN
CCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCC
QSSVAEESDLAPYKPLCDVLINGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKV
CCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCCHHHHHCHHEEECCCCCCCCCCCCHHHH
LLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVDWWLTPPEPIAALPMRYEYAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEECC
GGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA
CCEEEECCHHHHHHHCCCHHCCCCCHHCCCCCCCCCCEEEECCCCCCCCCCHHHHEEEEE
TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQ
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCH
WLAECHPGLPDDFQFRYWNGAHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILR
HHHHHCCCCCCCCEEEEECCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCEEEE
IALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVVTLVWRATLMKSARAQRFEAR
EEECCCCCCEEEEECCCCEEHHEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FVNHADLERLAVRSPASSIGSAGVRHG
HCCHHHHHHHHHCCCHHHHHCCCCCCC
>Mature Secondary Structure
MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPN
CCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCC
QSSVAEESDLAPYKPLCDVLINGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKV
CCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCCHHHHHCHHEEECCCCCCCCCCCCHHHH
LLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVDWWLTPPEPIAALPMRYEYAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEECC
GGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA
CCEEEECCHHHHHHHCCCHHCCCCCHHCCCCCCCCCCEEEECCCCCCCCCCHHHHEEEEE
TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQ
CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCH
WLAECHPGLPDDFQFRYWNGAHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILR
HHHHHCCCCCCCCEEEEECCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCEEEE
IALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVVTLVWRATLMKSARAQRFEAR
EEECCCCCCEEEEECCCCEEHHEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FVNHADLERLAVRSPASSIGSAGVRHG
HCCHHHHHHHHHCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA