| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351245
Identifier: 115351245
GI number: 115351245
Start: 1306349
End: 1307692
Strand: Direct
Name: 115351245
Synonym: Bamb_1192
Alternate gene names: NA
Gene position: 1306349-1307692 (Clockwise)
Preceding gene: 115351244
Following gene: 115351246
Centisome position: 36.73
GC content: 60.79
Gene sequence:
>1344_bases ATGGAGTTCTCCAATCACACGCCTTTCCCGGCATTGGCGTTCGAATCGTTTGCGCCGGACGGCGGATCCTTCCATACCGT TGTATTGCGGCAGACTTTCGATTTGCGCAATGGCTCATTGGTGCTGGCGCAGAAGCAGACCCCGCTCTCGACATCAGATC GCTTCCACGGCGAGCCGAATCAGTCCAGCGTGGCAGAGGAAAGCGATCTCGCGCCATATAAACCGCTTTGCGATGTACTG ATCAACGGGACGGCCTACGCGCCGCAGGGGCGATCGGTGCCGCGCTTCATGGCGGGTGTTCGAATTGTATCGGCGCCCAT GCGATCCGAAGACGACGCGGGTGTGCCGACGACGAAAGTCTTGCTAGATCGCAGGCTGTCCGTGACAGGCCAAAGGTACT TTGCTCGGCGGTCGATGCTTGGTCGAAGCATGAATCGACTCGTGAAGATCGCCTCGCTCGGCATCGTGCGTCCCGTCGAC TGGTGGCTGACGCCGCCCGAGCCAATCGCAGCGCTGCCTATGCGTTACGAATACGCATGGGGCGGGCAGTGTCGGGTCGA CGCGCAGGATCAGGCTGCGAAACGTGTGCCTAAGGCATCTCGGCTCAATGACAAACAGCTGGCTGCACATCCCGATCAAG ACAGCGTTCCGGTGGCGCATACGGCCTGCGAAGACAATCCGGTCGGTCTGGGGTTTGCTGAGCGTTGGTTCCTTACCGCG ACGAAGCAGCAAAAGGTCGCTGCGCCGCAGATCGAAGCCAGCAGTGAACCCATCTCGATACAAGCATGGCTAGCAGCTTC GAATGGGCAGCCGCATCCGTCGCTGCATCCGGTCGGCTTCGGTATCGTCGGGAAAGCGTGGGGATCGAGGCGTGAGCTTG CTGGCACCTACGATGATCAGTGGCTCGCTGAATGCCATCCGGGCTTACCAGACGACTTTCAGTTCAGGTACTGGAACGGC GCGCATCCGCTGATGCAGGTGCCGCACCTGAAGGGTAACGAGACGATCGTGCTGACGAATCTTGTTCCCGCCGGCACGCC CGGATCGACCGTCGACGAGCGTGGCAATACGATCCTGCGCATCGCCTTGCCAGGACATCTACCGATGGGATGGGTCTACA CCGACCAGTCGCTCAAGTTCGCGCCGCTGCTGCTCGATACGCTGTCTGTCGACGTGTCAGATACGGCGAAGCCCGTGGTG ACGTTGGTCTGGCGTGCGACGCTGATGAAATCCGCGCGTGCGCAGCGCTTTGAGGCAAGGTTTGTGAACCATGCCGACTT GGAGCGACTTGCCGTGCGTTCGCCGGCAAGCTCGATCGGATCAGCGGGAGTGCGGCATGGCTGA
Upstream 100 bases:
>100_bases ACGGACACATCACGCTGCGCGGCACGCAACTGTTGATCGAGGGCTCTGGGCCGGTGCAGATCAACGGCAAGGATGTCGAC GTCAACTGACGGGAGCGGCG
Downstream 100 bases:
>100_bases ACCACTGACTTTCACCATCACCGGCGACGCAGGCGACGTTTTCCGTGAGCACTTCAACATCCAGAGTGTCGAGCAGGCCC GCGACGCGGTGAAGAATCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 447; Mature: 447
Protein sequence:
>447_residues MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPNQSSVAEESDLAPYKPLCDVL INGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKVLLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVD WWLTPPEPIAALPMRYEYAWGGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQWLAECHPGLPDDFQFRYWNG AHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILRIALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVV TLVWRATLMKSARAQRFEARFVNHADLERLAVRSPASSIGSAGVRHG
Sequences:
>Translated_447_residues MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPNQSSVAEESDLAPYKPLCDVL INGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKVLLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVD WWLTPPEPIAALPMRYEYAWGGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQWLAECHPGLPDDFQFRYWNG AHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILRIALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVV TLVWRATLMKSARAQRFEARFVNHADLERLAVRSPASSIGSAGVRHG >Mature_447_residues MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPNQSSVAEESDLAPYKPLCDVL INGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKVLLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVD WWLTPPEPIAALPMRYEYAWGGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQWLAECHPGLPDDFQFRYWNG AHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILRIALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVV TLVWRATLMKSARAQRFEARFVNHADLERLAVRSPASSIGSAGVRHG
Specific function: Unknown
COG id: COG5351
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48959; Mature: 48959
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPN CCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCC QSSVAEESDLAPYKPLCDVLINGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKV CCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCCHHHHHCHHEEECCCCCCCCCCCCHHHH LLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVDWWLTPPEPIAALPMRYEYAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEECC GGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA CCEEEECCHHHHHHHCCCHHCCCCCHHCCCCCCCCCCEEEECCCCCCCCCCHHHHEEEEE TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQ CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCH WLAECHPGLPDDFQFRYWNGAHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILR HHHHHCCCCCCCCEEEEECCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCEEEE IALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVVTLVWRATLMKSARAQRFEAR EEECCCCCCEEEEECCCCEEHHEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FVNHADLERLAVRSPASSIGSAGVRHG HCCHHHHHHHHHCCCHHHHHCCCCCCC >Mature Secondary Structure MEFSNHTPFPALAFESFAPDGGSFHTVVLRQTFDLRNGSLVLAQKQTPLSTSDRFHGEPN CCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCC QSSVAEESDLAPYKPLCDVLINGTAYAPQGRSVPRFMAGVRIVSAPMRSEDDAGVPTTKV CCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCCHHHHHCHHEEECCCCCCCCCCCCHHHH LLDRRLSVTGQRYFARRSMLGRSMNRLVKIASLGIVRPVDWWLTPPEPIAALPMRYEYAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEECC GGQCRVDAQDQAAKRVPKASRLNDKQLAAHPDQDSVPVAHTACEDNPVGLGFAERWFLTA CCEEEECCHHHHHHHCCCHHCCCCCHHCCCCCCCCCCEEEECCCCCCCCCCHHHHEEEEE TKQQKVAAPQIEASSEPISIQAWLAASNGQPHPSLHPVGFGIVGKAWGSRRELAGTYDDQ CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCH WLAECHPGLPDDFQFRYWNGAHPLMQVPHLKGNETIVLTNLVPAGTPGSTVDERGNTILR HHHHHCCCCCCCCEEEEECCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCHHHCCCEEEE IALPGHLPMGWVYTDQSLKFAPLLLDTLSVDVSDTAKPVVTLVWRATLMKSARAQRFEAR EEECCCCCCEEEEECCCCEEHHEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FVNHADLERLAVRSPASSIGSAGVRHG HCCHHHHHHHHHCCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA