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The map label for this gene is recD [H]

Identifier: 115351153

GI number: 115351153

Start: 1206803

End: 1209127

Strand: Direct

Name: recD [H]

Synonym: Bamb_1099

Alternate gene names: 115351153

Gene position: 1206803-1209127 (Clockwise)

Preceding gene: 115351152

Following gene: 115351154

Centisome position: 33.93

GC content: 72.52

Gene sequence:

>2325_bases
ATGAACGCGTCCGACGATACGCTCGAATTCACCGGCGGCCTCGTCGCGCGCCTGCCCGAGCCCGCGGATTTCGGCATCGC
CCTCGCGGAAGGATTCGCGCGCCGCATGGGCGACCTGTCGCGCCGCGCGGGTGCGCCGGCCGTGGCCGCCCGCTGGGCGG
CGCGTGCCGCGTTCGCGACGAGCCGGGCGACCGCGGGCGGCCACGTGTGCGTGTCGCTCGGCGCGCTCGCGCAGCGCTAC
GAGGAGCCGGTCGACGACGTGCGCGCGGCGCTTGCCGCGAGCGGCGTGGTCGCGTTCGGTACGCTCGCGCGCGGCGACGA
GCGGCCGCTGATCGTCGACCGGCTCGACCATCTGTATCTGTCGCGCTATTTCGACTACGAACGGCGGCTCGCCGATGCGC
TCGTCGCGCAGGCCGGCGTCGCCGCACCGGGCGACGCGCTGTCGCCCGAGCGCTTGCGCGACAGTCTTGCGCGTTACTTC
GGGCCCGCGACGGGCGAGGTGGACTGGCAGCGCGTCGCCGCGATCGTTGCGCTGACCGGGCGCGTGACGATCGTCAGCGG
CGGCCCCGGCACCGGCAAGACAACGACCGTCGTCGGCGTGCTGGCTTGTCTGCTCGACGCGCATCCGGGGCTGCGCATCG
CGCTGGCGGCGCCGACCGGCAAGGCCGCGCAGCGCATGCAGGAAGCGCTGCACGCGCGGGCGGGCGACCTGCCGCCGGAA
CTCGCCGCGCGCCTGCCCGACACGTCGTACACGCTGCATCGCCTGCTGGGCGGCGGCGGAGCGGCGGGCTTCCGCCATCA
CCGCGACAATCCGTTGCCGTATGACCTGATCGTCGTCGACGAGGCGTCGATGATCGACGTCGCGCTCGCCGCGCATCTGC
TCGATGCGCTCGCGCCCGGCGCACGGCTCGTGCTGCTGGGCGACAAGGATCAGCTCGCCGCGGTCGAGGCCGGCGCCGTG
TTCGCCGAACTCAGCGCACGGCCGACGTTTACCGCCGCGGCACGCACGCGCATCGCGGGTGCACTCGGGATCGACGAGGC
GACTTTCGTCGCGGCGTTGCCGGTGCCCGACGGCGAGGCGGCGGCGGTTGTGGCGCCCGCTCTAGCTCCGGCCTCAGCGC
CAGCTCCGGCATCCGCGCCGGTGTCGACGAGCGCCGCGCGCAAGCCGCCGGCGCGACGGAACGTGGATACGCGCCAGGCG
TCGCTGTTCGACGACGATCCGCAGGACGAAGCGATGTCCGCTACCGATGTCGCCGCGCCGCCGGCCGCTTCGTTGTCACC
TGCGGCGGCCGCGCCGACCGACATCGATAGTGGCGCGGTCGCCGATCCAGCATGGATCGAAGCCGACGAACTCGCGTGGC
TCGATGCGATCGAGCTCGCGCCATTCGATCCGGCCGATGTGGTCAATGCGGCCAATGCAGCCGATTCGTCGCTTGCATCG
ACCGTCGCAACGCAACCCGACGACCACGCCGCAGCGTCACCCGCGCCCGCACCGCTTGCAGACTGCGTCGTGTGGCTCGA
ACGCAATTACCGTTTCGGTCTCGATTCGCCGATCGGCCGCCTGTCGCTGGCGATCCGCCGCGGCGACGTGCAGGCCGCGC
TCGATGCGTTGCCGACCGACGATGCCGCTGCCGCGTCGTTTCATGACGACGCGAGCGATACGCTTGCGGCGTCGACGGTC
GAGCGGCTCGCGCGCCGGTTCGGCGCGTACCTCGACGCATTGCGTACTGCGTTGTCCGAGCCGGTGCCTGACCCATTGCC
GCTGTTCGATGCGCTCAACCGCTTCCGGATCCTCTGCGCGACGCGCACGGGGTCGCGCGGCGCCGAGCACGTCAATGCGC
TGGTGGCCACGCACGTGCGGCATGCCGCGCGCGTGCCGCTCGCGGTCGGCGCACACTGGTTCACCGGGCGGCCGATCATG
GTCACGCGTAACGACTATGCGCTCGGGCTGTTCAACGGCGACATCGGCATTGCGTTGCCGGACGCGCACGGTGTGCTGCG
CGTGTGGTTCCGGCGCGCGGACGGCACCGCGCGCGCCGTGTCGCTCGCCGCGCTGCCGCCGCACGAAACGGCGTTCGCGC
TGACAGTCCACAAGTCGCAGGGCTCGGAATTCGACGAGGCCGCGCTCGTGCTGCCGGCGTCGTTCGGGCGTGTGCTCACG
CGCGAACTCGTCTATACGGCCGTCACGCGTGCACGCACGCGCGTACAGGTGATCGGCCCGCGGCGCGTGCTCGCGCAGGC
GGTCGCGACGCGCACGCAACGCGATTCGGGCCTCGCGGCCCGCGTGGAGGCGCTCGCGCGGCGTCGCAAGGAGCCGTCGC
GATGA

Upstream 100 bases:

>100_bases
CCGACTGGCGCAGCGGCGGCGAACCGGCCGGCGTGCATGCGCGGCGGCCCGCGCGCGAACTCGTCGATGCACTCGACCGG
ATGATGGAAGGGGGCCGCGC

Downstream 100 bases:

>100_bases
TGATCCGCTACACGCTCGATCCGGCCGAAGTCGAATGGACCGCCGTGCGCGCGCAGGGCGCCGGCGGACAGAACGTCAAC
AAGGTGTCGAGCGCGATTCA

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 774; Mature: 774

Protein sequence:

>774_residues
MNASDDTLEFTGGLVARLPEPADFGIALAEGFARRMGDLSRRAGAPAVAARWAARAAFATSRATAGGHVCVSLGALAQRY
EEPVDDVRAALAASGVVAFGTLARGDERPLIVDRLDHLYLSRYFDYERRLADALVAQAGVAAPGDALSPERLRDSLARYF
GPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAV
FAELSARPTFTAAARTRIAGALGIDEATFVAALPVPDGEAAAVVAPALAPASAPAPASAPVSTSAARKPPARRNVDTRQA
SLFDDDPQDEAMSATDVAAPPAASLSPAAAAPTDIDSGAVADPAWIEADELAWLDAIELAPFDPADVVNAANAADSSLAS
TVATQPDDHAAASPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPTDDAAAASFHDDASDTLAASTV
ERLARRFGAYLDALRTALSEPVPDPLPLFDALNRFRILCATRTGSRGAEHVNALVATHVRHAARVPLAVGAHWFTGRPIM
VTRNDYALGLFNGDIGIALPDAHGVLRVWFRRADGTARAVSLAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLT
RELVYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVEALARRRKEPSR

Sequences:

>Translated_774_residues
MNASDDTLEFTGGLVARLPEPADFGIALAEGFARRMGDLSRRAGAPAVAARWAARAAFATSRATAGGHVCVSLGALAQRY
EEPVDDVRAALAASGVVAFGTLARGDERPLIVDRLDHLYLSRYFDYERRLADALVAQAGVAAPGDALSPERLRDSLARYF
GPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAV
FAELSARPTFTAAARTRIAGALGIDEATFVAALPVPDGEAAAVVAPALAPASAPAPASAPVSTSAARKPPARRNVDTRQA
SLFDDDPQDEAMSATDVAAPPAASLSPAAAAPTDIDSGAVADPAWIEADELAWLDAIELAPFDPADVVNAANAADSSLAS
TVATQPDDHAAASPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPTDDAAAASFHDDASDTLAASTV
ERLARRFGAYLDALRTALSEPVPDPLPLFDALNRFRILCATRTGSRGAEHVNALVATHVRHAARVPLAVGAHWFTGRPIM
VTRNDYALGLFNGDIGIALPDAHGVLRVWFRRADGTARAVSLAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLT
RELVYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVEALARRRKEPSR
>Mature_774_residues
MNASDDTLEFTGGLVARLPEPADFGIALAEGFARRMGDLSRRAGAPAVAARWAARAAFATSRATAGGHVCVSLGALAQRY
EEPVDDVRAALAASGVVAFGTLARGDERPLIVDRLDHLYLSRYFDYERRLADALVAQAGVAAPGDALSPERLRDSLARYF
GPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAV
FAELSARPTFTAAARTRIAGALGIDEATFVAALPVPDGEAAAVVAPALAPASAPAPASAPVSTSAARKPPARRNVDTRQA
SLFDDDPQDEAMSATDVAAPPAASLSPAAAAPTDIDSGAVADPAWIEADELAWLDAIELAPFDPADVVNAANAADSSLAS
TVATQPDDHAAASPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPTDDAAAASFHDDASDTLAASTV
ERLARRFGAYLDALRTALSEPVPDPLPLFDALNRFRILCATRTGSRGAEHVNALVATHVRHAARVPLAVGAHWFTGRPIM
VTRNDYALGLFNGDIGIALPDAHGVLRVWFRRADGTARAVSLAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLT
RELVYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVEALARRRKEPSR

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=264, Percent_Identity=44.6969696969697, Blast_Score=209, Evalue=5e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 80784; Mature: 80784

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASDDTLEFTGGLVARLPEPADFGIALAEGFARRMGDLSRRAGAPAVAARWAARAAFAT
CCCCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SRATAGGHVCVSLGALAQRYEEPVDDVRAALAASGVVAFGTLARGDERPLIVDRLDHLYL
HCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
SRYFDYERRLADALVAQAGVAAPGDALSPERLRDSLARYFGPATGEVDWQRVAAIVALTG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEC
RVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCHH
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPG
HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC
ARLVLLGDKDQLAAVEAGAVFAELSARPTFTAAARTRIAGALGIDEATFVAALPVPDGEA
CEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
AAVVAPALAPASAPAPASAPVSTSAARKPPARRNVDTRQASLFDDDPQDEAMSATDVAAP
CEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHCCHHHCCCC
PAASLSPAAAAPTDIDSGAVADPAWIEADELAWLDAIELAPFDPADVVNAANAADSSLAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHH
TVATQPDDHAAASPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPTD
HHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCC
DAAAASFHDDASDTLAASTVERLARRFGAYLDALRTALSEPVPDPLPLFDALNRFRILCA
CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEE
TRTGSRGAEHVNALVATHVRHAARVPLAVGAHWFTGRPIMVTRNDYALGLFNGDIGIALP
ECCCCCCHHHHHHHHHHHHHHHHCCCCEECCEEECCCEEEEECCCEEEEEEECCEEEEEC
DAHGVLRVWFRRADGTARAVSLAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLT
CCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHH
RELVYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVEALARRRKEPSR
HHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNASDDTLEFTGGLVARLPEPADFGIALAEGFARRMGDLSRRAGAPAVAARWAARAAFAT
CCCCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SRATAGGHVCVSLGALAQRYEEPVDDVRAALAASGVVAFGTLARGDERPLIVDRLDHLYL
HCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
SRYFDYERRLADALVAQAGVAAPGDALSPERLRDSLARYFGPATGEVDWQRVAAIVALTG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEC
RVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCHH
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPG
HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC
ARLVLLGDKDQLAAVEAGAVFAELSARPTFTAAARTRIAGALGIDEATFVAALPVPDGEA
CEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
AAVVAPALAPASAPAPASAPVSTSAARKPPARRNVDTRQASLFDDDPQDEAMSATDVAAP
CEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHCCHHHCCCC
PAASLSPAAAAPTDIDSGAVADPAWIEADELAWLDAIELAPFDPADVVNAANAADSSLAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHH
TVATQPDDHAAASPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPTD
HHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCC
DAAAASFHDDASDTLAASTVERLARRFGAYLDALRTALSEPVPDPLPLFDALNRFRILCA
CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEE
TRTGSRGAEHVNALVATHVRHAARVPLAVGAHWFTGRPIMVTRNDYALGLFNGDIGIALP
ECCCCCCHHHHHHHHHHHHHHHHCCCCEECCEEECCCEEEEECCCEEEEEEECCEEEEEC
DAHGVLRVWFRRADGTARAVSLAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLT
CCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHH
RELVYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVEALARRRKEPSR
HHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]