Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351126

Identifier: 115351126

GI number: 115351126

Start: 1165575

End: 1167098

Strand: Direct

Name: 115351126

Synonym: Bamb_1072

Alternate gene names: NA

Gene position: 1165575-1167098 (Clockwise)

Preceding gene: 115351124

Following gene: 115351128

Centisome position: 32.77

GC content: 68.5

Gene sequence:

>1524_bases
ATGGCATTACCCCTGGACAACGTCAGCATGGCCGTGTTCTGCGACTTCGAGAACGTCGCGCTCGGCGTGCGCGACGCGAA
GTACGAGAAATTCGACATCCAGCCCGTGCTGGAGCGGCTGCTGCTGAAGGGCAGCATCGTCGTGAAGAAGGCATATTGCG
ACTGGGAGCGCTACAAGGGCTTCAAGGCGTCGATGCACGAGGCGAGCTTCGAGCTGATCGAGATTCCGCACGTGCGCCAG
TCGGGCAAGAACTCGGCCGACATCCGGCTCGTCGTGGACGCGCTCGATCTCTGCTACACGAAGTCGCACGTCGACACGTT
CGTGATCATCAGCGGCGACTCGGATTTTTCGCCGCTCGTGTCGAAGCTGCGCGAGAACGCGAAGAAGGTGATCGGGGTCG
GCGTGAAGAAGTCGACGTCGGACCTGCTGGTCGCGAACTGCGACGAATTCATTTTCTACGACGATCTGGTGCGCGAGCAG
CAGCGCGCGCAGGCGAAGCGCGAACAGCAGCACGCCGGTAACGGCGGCGCGAAGCGGCCGGACGAACCGTCGCGCAAGCC
GGAGCTGGAAGCGCGCCGCAGCGAGGCGATCGCGCTCGCGGTCGAGACGTTCGATGCGTTGGCCTCGGAGCGCGACGACG
TCGGCAAGATCTGGGCGTCGGTGCTCAAGAGCGCGATCAAGCGCCGCAAGCCGGACTTCAACGAGTCGTATTACGGCTTC
CGCGCGTTCGGCAACCTGCTGGACGAAGCGCAGGCGCGCGGGCTGCTCGAAGTGGGGCGCGACGACAAGTCGGGCGCGTT
CGTGTCGCGGCCGCGCCAGTCGTCCGTGGCGGAGCAGGCGGCGGCGCGTGATACGGGCGGCGCGCACCATGGTCACGGCG
CGCATCACGGTCACGGCGGGCGTCATGCGGAAGCGGCAGCACCGGCCGAGCGCCAGTCGCGGCGTCGCGGGCAGCGGGCG
GAAGCAGCCGTGCAGGAAAGCGTGCACGCCGACGCGCAAGAGGCGGCCGTCGTCGATGTCACGGATGAAGTGGCGCTCGT
GCCGGCAGCGACGGCCGAAGCGACTGTAGTGACCGAAGCGACTGAAGTGGCCGACACGCACGGTGAAGCGAAGGACGGCC
GCAAGCGCGCGCGCAAGAGCGCGGCGAAGAAGACCGGCGCCAAGAAGGGCGGCGAAGCAAAGGGCGGCGAGGCAAAGGGT
GCCGGCCGTCAGGCGGCGGCGAAGCCGGACGAGGCCGCGCACGGCGGTGCGAAGCATGGTGGCGACAAGCACGCGCAAGG
CATGCCTGCCGAAGCGACGCATCGCGACATGGAGCATCGTGAGGAACGGCACGTCGCGGCGCCGACGGCTGGCGAGTACG
GCGCTCCGGCGGCTGCCGCGCAGCCGGCGCACGAAGCGGCACCGGCTGCCGAATCGACCGGCGAGGCGGCTGGCGAAACC
GTCGCCGCAAAGCCGAAGAAACCGGCCCGCAAGACGGCTCCCCGCGCGCGTCGTCCGCGCAAGACGGCCACCGCGGCCGA
GTAA

Upstream 100 bases:

>100_bases
CGCAGCGATTGCGGAATCGACCCGCTGACCGGCTATCATGTGCGCGATGCATTTTTCGCCGCGACGCAAGCAACGCGGCG
ACCAACCGGTTGGAGTACAC

Downstream 100 bases:

>100_bases
CGCCGACCGCGCCGACCGCGCCGACCGCGCCGACCGCGTCAACCGCGTCAACCGCGTCAACCGCGCCAACCGCGCCAACC
GCGCCAACCGCGCCAACCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKGFKASMHEASFELIEIPHVRQ
SGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQ
QRAQAKREQQHAGNGGAKRPDEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGF
RAFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGGRHAEAAAPAERQSRRRGQRA
EAAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEATEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKG
AGRQAAAKPDEAAHGGAKHGGDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGET
VAAKPKKPARKTAPRARRPRKTATAAE

Sequences:

>Translated_507_residues
MALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKGFKASMHEASFELIEIPHVRQ
SGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQ
QRAQAKREQQHAGNGGAKRPDEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGF
RAFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGGRHAEAAAPAERQSRRRGQRA
EAAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEATEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKG
AGRQAAAKPDEAAHGGAKHGGDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGET
VAAKPKKPARKTAPRARRPRKTATAAE
>Mature_506_residues
ALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKGFKASMHEASFELIEIPHVRQS
GKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQQ
RAQAKREQQHAGNGGAKRPDEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGFR
AFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGGRHAEAAAPAERQSRRRGQRAE
AAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEATEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKGA
GRQAAAKPDEAAHGGAKHGGDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGETV
AAKPKKPARKTAPRARRPRKTATAAE

Specific function: Unknown

COG id: COG1432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54272; Mature: 54141

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKG
CCCCCCCCCEEEEECCCHHEECCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHCHHHHCC
FKASMHEASFELIEIPHVRQSGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLV
CHHHHHHCCCCEEECCCHHHCCCCCCCCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
SKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQQRAQAKREQQHAGNGGAKRP
HHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
RAFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGG
HHHHHHHHHHHHCCHHHHCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RHAEAAAPAERQSRRRGQRAEAAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEA
CCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCHHHCEEEEECCCEEEEECCCCCCEEEHHH
TEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKGAGRQAAAKPDEAAHGGAKHG
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
GDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGET
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHCCCCCCCCHHCCCC
VAAKPKKPARKTAPRARRPRKTATAAE
CCCCCCCCCHHCCCHHCCCCCCCCCCC
>Mature Secondary Structure 
ALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKG
CCCCCCCCEEEEECCCHHEECCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHCHHHHCC
FKASMHEASFELIEIPHVRQSGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLV
CHHHHHHCCCCEEECCCHHHCCCCCCCCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
SKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQQRAQAKREQQHAGNGGAKRP
HHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
RAFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGG
HHHHHHHHHHHHCCHHHHCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RHAEAAAPAERQSRRRGQRAEAAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEA
CCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCHHHCEEEEECCCEEEEECCCCCCEEEHHH
TEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKGAGRQAAAKPDEAAHGGAKHG
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
GDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGET
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHCCCCCCCCHHCCCC
VAAKPKKPARKTAPRARRPRKTATAAE
CCCCCCCCCHHCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA