| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351126
Identifier: 115351126
GI number: 115351126
Start: 1165575
End: 1167098
Strand: Direct
Name: 115351126
Synonym: Bamb_1072
Alternate gene names: NA
Gene position: 1165575-1167098 (Clockwise)
Preceding gene: 115351124
Following gene: 115351128
Centisome position: 32.77
GC content: 68.5
Gene sequence:
>1524_bases ATGGCATTACCCCTGGACAACGTCAGCATGGCCGTGTTCTGCGACTTCGAGAACGTCGCGCTCGGCGTGCGCGACGCGAA GTACGAGAAATTCGACATCCAGCCCGTGCTGGAGCGGCTGCTGCTGAAGGGCAGCATCGTCGTGAAGAAGGCATATTGCG ACTGGGAGCGCTACAAGGGCTTCAAGGCGTCGATGCACGAGGCGAGCTTCGAGCTGATCGAGATTCCGCACGTGCGCCAG TCGGGCAAGAACTCGGCCGACATCCGGCTCGTCGTGGACGCGCTCGATCTCTGCTACACGAAGTCGCACGTCGACACGTT CGTGATCATCAGCGGCGACTCGGATTTTTCGCCGCTCGTGTCGAAGCTGCGCGAGAACGCGAAGAAGGTGATCGGGGTCG GCGTGAAGAAGTCGACGTCGGACCTGCTGGTCGCGAACTGCGACGAATTCATTTTCTACGACGATCTGGTGCGCGAGCAG CAGCGCGCGCAGGCGAAGCGCGAACAGCAGCACGCCGGTAACGGCGGCGCGAAGCGGCCGGACGAACCGTCGCGCAAGCC GGAGCTGGAAGCGCGCCGCAGCGAGGCGATCGCGCTCGCGGTCGAGACGTTCGATGCGTTGGCCTCGGAGCGCGACGACG TCGGCAAGATCTGGGCGTCGGTGCTCAAGAGCGCGATCAAGCGCCGCAAGCCGGACTTCAACGAGTCGTATTACGGCTTC CGCGCGTTCGGCAACCTGCTGGACGAAGCGCAGGCGCGCGGGCTGCTCGAAGTGGGGCGCGACGACAAGTCGGGCGCGTT CGTGTCGCGGCCGCGCCAGTCGTCCGTGGCGGAGCAGGCGGCGGCGCGTGATACGGGCGGCGCGCACCATGGTCACGGCG CGCATCACGGTCACGGCGGGCGTCATGCGGAAGCGGCAGCACCGGCCGAGCGCCAGTCGCGGCGTCGCGGGCAGCGGGCG GAAGCAGCCGTGCAGGAAAGCGTGCACGCCGACGCGCAAGAGGCGGCCGTCGTCGATGTCACGGATGAAGTGGCGCTCGT GCCGGCAGCGACGGCCGAAGCGACTGTAGTGACCGAAGCGACTGAAGTGGCCGACACGCACGGTGAAGCGAAGGACGGCC GCAAGCGCGCGCGCAAGAGCGCGGCGAAGAAGACCGGCGCCAAGAAGGGCGGCGAAGCAAAGGGCGGCGAGGCAAAGGGT GCCGGCCGTCAGGCGGCGGCGAAGCCGGACGAGGCCGCGCACGGCGGTGCGAAGCATGGTGGCGACAAGCACGCGCAAGG CATGCCTGCCGAAGCGACGCATCGCGACATGGAGCATCGTGAGGAACGGCACGTCGCGGCGCCGACGGCTGGCGAGTACG GCGCTCCGGCGGCTGCCGCGCAGCCGGCGCACGAAGCGGCACCGGCTGCCGAATCGACCGGCGAGGCGGCTGGCGAAACC GTCGCCGCAAAGCCGAAGAAACCGGCCCGCAAGACGGCTCCCCGCGCGCGTCGTCCGCGCAAGACGGCCACCGCGGCCGA GTAA
Upstream 100 bases:
>100_bases CGCAGCGATTGCGGAATCGACCCGCTGACCGGCTATCATGTGCGCGATGCATTTTTCGCCGCGACGCAAGCAACGCGGCG ACCAACCGGTTGGAGTACAC
Downstream 100 bases:
>100_bases CGCCGACCGCGCCGACCGCGCCGACCGCGCCGACCGCGTCAACCGCGTCAACCGCGTCAACCGCGCCAACCGCGCCAACC GCGCCAACCGCGCCAACCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 507; Mature: 506
Protein sequence:
>507_residues MALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKGFKASMHEASFELIEIPHVRQ SGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQ QRAQAKREQQHAGNGGAKRPDEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGF RAFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGGRHAEAAAPAERQSRRRGQRA EAAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEATEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKG AGRQAAAKPDEAAHGGAKHGGDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGET VAAKPKKPARKTAPRARRPRKTATAAE
Sequences:
>Translated_507_residues MALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKGFKASMHEASFELIEIPHVRQ SGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQ QRAQAKREQQHAGNGGAKRPDEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGF RAFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGGRHAEAAAPAERQSRRRGQRA EAAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEATEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKG AGRQAAAKPDEAAHGGAKHGGDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGET VAAKPKKPARKTAPRARRPRKTATAAE >Mature_506_residues ALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKGFKASMHEASFELIEIPHVRQS GKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLVSKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQQ RAQAKREQQHAGNGGAKRPDEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGFR AFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGGRHAEAAAPAERQSRRRGQRAE AAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEATEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKGA GRQAAAKPDEAAHGGAKHGGDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGETV AAKPKKPARKTAPRARRPRKTATAAE
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54272; Mature: 54141
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKG CCCCCCCCCEEEEECCCHHEECCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHCHHHHCC FKASMHEASFELIEIPHVRQSGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLV CHHHHHHCCCCEEECCCHHHCCCCCCCCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHH SKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQQRAQAKREQQHAGNGGAKRP HHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH RAFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGG HHHHHHHHHHHHCCHHHHCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC RHAEAAAPAERQSRRRGQRAEAAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEA CCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCHHHCEEEEECCCEEEEECCCCCCEEEHHH TEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKGAGRQAAAKPDEAAHGGAKHG HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC GDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGET CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHCCCCCCCCHHCCCC VAAKPKKPARKTAPRARRPRKTATAAE CCCCCCCCCHHCCCHHCCCCCCCCCCC >Mature Secondary Structure ALPLDNVSMAVFCDFENVALGVRDAKYEKFDIQPVLERLLLKGSIVVKKAYCDWERYKG CCCCCCCCEEEEECCCHHEECCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHCHHHHCC FKASMHEASFELIEIPHVRQSGKNSADIRLVVDALDLCYTKSHVDTFVIISGDSDFSPLV CHHHHHHCCCCEEECCCHHHCCCCCCCCEEHHHHHHHHHHHCCCCEEEEEECCCCHHHHH SKLRENAKKVIGVGVKKSTSDLLVANCDEFIFYDDLVREQQRAQAKREQQHAGNGGAKRP HHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DEPSRKPELEARRSEAIALAVETFDALASERDDVGKIWASVLKSAIKRRKPDFNESYYGF CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH RAFGNLLDEAQARGLLEVGRDDKSGAFVSRPRQSSVAEQAAARDTGGAHHGHGAHHGHGG HHHHHHHHHHHHCCHHHHCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC RHAEAAAPAERQSRRRGQRAEAAVQESVHADAQEAAVVDVTDEVALVPAATAEATVVTEA CCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCHHHCEEEEECCCEEEEECCCCCCEEEHHH TEVADTHGEAKDGRKRARKSAAKKTGAKKGGEAKGGEAKGAGRQAAAKPDEAAHGGAKHG HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC GDKHAQGMPAEATHRDMEHREERHVAAPTAGEYGAPAAAAQPAHEAAPAAESTGEAAGET CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHCCCCCCCCHHCCCC VAAKPKKPARKTAPRARRPRKTATAAE CCCCCCCCCHHCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA