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The map label for this gene is rimM

Identifier: 115351000

GI number: 115351000

Start: 1038027

End: 1038740

Strand: Direct

Name: rimM

Synonym: Bamb_0946

Alternate gene names: 115351000

Gene position: 1038027-1038740 (Clockwise)

Preceding gene: 115350999

Following gene: 115351001

Centisome position: 29.19

GC content: 65.27

Gene sequence:

>714_bases
GTGTGCCGGTCGTGCCGGCTGCAAGGAGCATTGATGTCCGGTCACGATTCCGGTAACGCAAAGCGCGGGCGAGCGTCGTT
TGGCGCATTCGTCCGCAAGCCGGTCGAGCGCGACGTTGTCGCGAGCGCCGGTGAGGCTGCCGAGCAGGGCAGTCTCGAAG
CGGTGCAAGCCTGGCCCGACGATGCTGTCGAGGTCGGGGCAGTGGTCGACGCCTATGGCCTGAAAGGCTGGATCAAGGTG
GCGACGCATGCCGACGCCGGTCGCGGCGGCGATGCGCTGCTCGACGCGCGCCGCTGGTGGCTGGAACGGGGTGGGGAGCG
GTTGTCCGCCCGCATCCTGCAGTCGAAAACGCACGGCGACACAGTCGTCGCGCATGCCGCGGGTGTCAGCGACCGCGATG
CCGCATTGGCTTTGCGCGGCTTTCGCGTGTTCGTGCGCCGGGAAGATTTCCCGGCATTGGCCGCGGACGAATTCTATTGG
GTCGACCTGATCGGTCTCGAGGTCGTCAACGAGCAATCGGTGGCGCTTGGGACAGTGAGCGGGATGATCGACAACGGCGT
GCATTCGATCATGCGCGTCGAGTATCCGGCAGTCGGCAAGGATGGTCAGCCGACCACCGACGAACGGCTGATTCCGTTCG
TCGGCGTATACGTCAAGACGGTGGATCAGGCGGCACGTCGCATCGTCGTCGACTGGGAAGCCGATTACTCATGA

Upstream 100 bases:

>100_bases
CCTGACGTACTGGCAAGGTGTTGGCGCGCAACTGTCGCCGACCGTCCAGCGTCTCGTGAAGGAAGCGCAAAAGGCGCAAC
CGGCCGCCTAACATGGCGCG

Downstream 100 bases:

>100_bases
ACCAGGTTACGGAGAGCGCGGTGCAGTTCGACGTCGTCACGCTCTTTCCTGAAATGTTCCGCGCGCTGACCGACTGGGGT
ATCACCAGCCGGGCCGTGAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MCRSCRLQGALMSGHDSGNAKRGRASFGAFVRKPVERDVVASAGEAAEQGSLEAVQAWPDDAVEVGAVVDAYGLKGWIKV
ATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHGDTVVAHAAGVSDRDAALALRGFRVFVRREDFPALAADEFYW
VDLIGLEVVNEQSVALGTVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADYS

Sequences:

>Translated_237_residues
MCRSCRLQGALMSGHDSGNAKRGRASFGAFVRKPVERDVVASAGEAAEQGSLEAVQAWPDDAVEVGAVVDAYGLKGWIKV
ATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHGDTVVAHAAGVSDRDAALALRGFRVFVRREDFPALAADEFYW
VDLIGLEVVNEQSVALGTVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADYS
>Mature_237_residues
MCRSCRLQGALMSGHDSGNAKRGRASFGAFVRKPVERDVVASAGEAAEQGSLEAVQAWPDDAVEVGAVVDAYGLKGWIKV
ATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHGDTVVAHAAGVSDRDAALALRGFRVFVRREDFPALAADEFYW
VDLIGLEVVNEQSVALGTVSGMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADYS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=179, Percent_Identity=28.4916201117318, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 25596; Mature: 25596

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRSCRLQGALMSGHDSGNAKRGRASFGAFVRKPVERDVVASAGEAAEQGSLEAVQAWPD
CCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHCCCCCEECCCCC
DAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHGD
CHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
TVVAHAAGVSDRDAALALRGFRVFVRREDFPALAADEFYWVDLIGLEVVNEQSVALGTVS
EEEEEECCCCCCHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCEEHHHHH
GMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADYS
HHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCC
>Mature Secondary Structure
MCRSCRLQGALMSGHDSGNAKRGRASFGAFVRKPVERDVVASAGEAAEQGSLEAVQAWPD
CCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHCCCCCEECCCCC
DAVEVGAVVDAYGLKGWIKVATHADAGRGGDALLDARRWWLERGGERLSARILQSKTHGD
CHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
TVVAHAAGVSDRDAALALRGFRVFVRREDFPALAADEFYWVDLIGLEVVNEQSVALGTVS
EEEEEECCCCCCHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCEEHHHHH
GMIDNGVHSIMRVEYPAVGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADYS
HHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA