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The map label for this gene is ycjP [C]

Identifier: 115350884

GI number: 115350884

Start: 916454

End: 917311

Strand: Direct

Name: ycjP [C]

Synonym: Bamb_0830

Alternate gene names: 115350884

Gene position: 916454-917311 (Clockwise)

Preceding gene: 115350883

Following gene: 115350885

Centisome position: 25.77

GC content: 62.59

Gene sequence:

>858_bases
ATGCAGCCTAAGATGACGATCAGCCGGGCAGTGATCTATGCGGCGCTGATCCTGTTCGCGCTGTATTTCCTGTTCCCGAT
CTACGTGATGCTGTCGACGTCGTTCAAGGACCTCGACCAGCTTCGCACCGGCAACCTGCTGACGCCGCCGACGCACTGGA
CTTTCGATCCGTGGGTGAAGGCGTGGAGCGGCGCGTGTACCGGCGTGCGCTGCGACGGGATGAAGCCGTTCTTCCTGAAT
TCGCTGCAGATGGTGATTCCGGCCGTGCTGATCTCGTCGCTGATCGGCGCGTTCAACGGCTACGTGCTCACGCACTGGCG
CTTTCGCGGCGCGGATGCGCTGTTCACGATGATGCTGGTCGGCTGCTTCATTCCGTTCCAGGTGATCCTGCTGCCGATGG
CGCGCCTGCAGGGGATGCTCGGCCTCGCGAATACGATTCCGGGCCTGGTGTTCGTGCACGTCGTGTACGGCATCGCGTTC
ACGACGATGTTCTTCCGCAACTTCTACGTGAGCGTGCCGGCCGAGCTCGTGAAGGCCGCGCGCATCGACGGCGCGGGTTT
CTTCACGATCTTCACGAAGATCCTGCTGCCCGTGTCGCTGCCGATCTTCATGGTGTGCCTGATCTGGCAATTCACGCAGA
TCTGGAATGACTTCCTGTTCGGGATCGTGTTCTCCGGCGTCGACTCGATGCCGATCACGGTCGCGCTGAACAACCTCGTC
AACACGTCGACGGGCGTGAAGGAGTACAACGTCGACATGGCGGGCGCGATCATCGCCGCGCTGCCGACGCTGCTCGTCTA
CGTGGTCGCCGGCCGCTACTTCGTGCGCGGGCTGACGGCGGGCGCGGTGAAGGGGTAA

Upstream 100 bases:

>100_bases
GGCCAGCTCGGGCTCGGCGCGGCGTCGTCGGTGATGATGCTCGCGACCGTGGTCGCGGTGCTGGTGCCGCTGATGTATAT
GGAATCGAGGAGCACCCGCA

Downstream 100 bases:

>100_bases
GCGCGGTTTCATCCGATACGACGAACCGGCCGCGCGCGACGCGCGGCGCATCGAAACGAACCCGACGCGGCGCCGCAGGG
CGCCGCGCGAGACGAGACAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MQPKMTISRAVIYAALILFALYFLFPIYVMLSTSFKDLDQLRTGNLLTPPTHWTFDPWVKAWSGACTGVRCDGMKPFFLN
SLQMVIPAVLISSLIGAFNGYVLTHWRFRGADALFTMMLVGCFIPFQVILLPMARLQGMLGLANTIPGLVFVHVVYGIAF
TTMFFRNFYVSVPAELVKAARIDGAGFFTIFTKILLPVSLPIFMVCLIWQFTQIWNDFLFGIVFSGVDSMPITVALNNLV
NTSTGVKEYNVDMAGAIIAALPTLLVYVVAGRYFVRGLTAGAVKG

Sequences:

>Translated_285_residues
MQPKMTISRAVIYAALILFALYFLFPIYVMLSTSFKDLDQLRTGNLLTPPTHWTFDPWVKAWSGACTGVRCDGMKPFFLN
SLQMVIPAVLISSLIGAFNGYVLTHWRFRGADALFTMMLVGCFIPFQVILLPMARLQGMLGLANTIPGLVFVHVVYGIAF
TTMFFRNFYVSVPAELVKAARIDGAGFFTIFTKILLPVSLPIFMVCLIWQFTQIWNDFLFGIVFSGVDSMPITVALNNLV
NTSTGVKEYNVDMAGAIIAALPTLLVYVVAGRYFVRGLTAGAVKG
>Mature_285_residues
MQPKMTISRAVIYAALILFALYFLFPIYVMLSTSFKDLDQLRTGNLLTPPTHWTFDPWVKAWSGACTGVRCDGMKPFFLN
SLQMVIPAVLISSLIGAFNGYVLTHWRFRGADALFTMMLVGCFIPFQVILLPMARLQGMLGLANTIPGLVFVHVVYGIAF
TTMFFRNFYVSVPAELVKAARIDGAGFFTIFTKILLPVSLPIFMVCLIWQFTQIWNDFLFGIVFSGVDSMPITVALNNLV
NTSTGVKEYNVDMAGAIIAALPTLLVYVVAGRYFVRGLTAGAVKG

Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=286, Percent_Identity=26.9230769230769, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789860, Length=271, Percent_Identity=25.830258302583, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790464, Length=302, Percent_Identity=27.8145695364238, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31534; Mature: 31534

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]