| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is bcr [H]
Identifier: 115350878
GI number: 115350878
Start: 908155
End: 909459
Strand: Direct
Name: bcr [H]
Synonym: Bamb_0824
Alternate gene names: 115350878
Gene position: 908155-909459 (Clockwise)
Preceding gene: 115350868
Following gene: 115350882
Centisome position: 25.53
GC content: 71.03
Gene sequence:
>1305_bases ATGGGCCTGAGCGCCGTCCGCGGCGCGGCCTCCCGTCTTCACCGCCACGCGCGCCCCGATGCGCGCGGGCCTCCATTCCG GATACCCATGTCCCACGTCGTCCGGCGCCGGCCCGATGCCCGGCTGATCCTGTTGCTCGGCGCGCTCGCCGCCTGCGGGC CGATTGCCACCGACATGTACCTGCCGAGCCTGCCGTCGATCGCCGACGGCTTCTCCGTGAGCCCCGGCGCCGCGCAGCGC ACGCTGACGAGCTTCATGGCCGGCTTCTCGATCGGCATGCTGCTGTACGGTCCGCTGTCCGATACGTGGGGCCGCCGCCC GGTGCTGCTCGGCGGCATCGCACTGTTCACGCTCGCGAGCATCGGCTGCTTCGTGTCGGGCTCGATCGACATGCTGATCA TCGTGCGCTTCCTGCAGGCGCTCGGCGCGGGCGCCGCGTCGGTGCTCGCCCGCGCGATCGCGCGCGACGCGCACGAGCCG ACCGACGCGGCGAAGGTGCTGTCGATGGTCGCGATCGTCACCGCGGTCGGGCCGCTGCTCGCGCCGCTGATCGGCGGGCA GATCCTGCGCTTCGCCGGCTGGCGCGGCGTGTTCGTCGTGCTGGCCGCGTTCGGCGCACTGTGCGCGGCGACCGCGTACC TGCGCGTGCCCGAAACCTGGCCGAAGGAGCGGCGCAAGAGCGCGGCCGTGCTTGCATCGTTCGCGTCGTACGGGCGCATC CTGTCCGATCCGGTCGCGTGGGGGCACATGCTGTGCGGCGGGATGGCGTTCGCGGCGATGTTCTCGTACATCACCGCGAC GCCGTTCGTGTACATCGAGTATTTCCACGTGTCACCGCAGCACTACGGGCTGCTGTTCGGGCTGAACGTCGTCGGGATCA TGATCGGCAACTTCGCGAACACGCGGCTCGTCGGCCGCATTGGCTCGCTGCGCCTCATTGCCGCCGCGTCGCTGGTGAGC TGCATCGCGTCGCTCGCGGTCGCGCTCGTCGCGCTGACGGGGTGGGGCGGGCTGTGGTCGATCGTCGTGTGCCTGTTCTT CGTGGTCGGCGTGGTCGGGATCCTGTCCGCGAACTGCACGACCGACCTGATGCATCGCTACCCGCACAACGCGGGCGCGT CGGCGGCCGTGTTCGGTGCGATGCAGCTCGCGCTCGGCGCGCTCGCGAGCGTGGCGATCGGCGCACTCGCGGATGGCACG CCGTTCGCGATGGGCGTGACGATCGGTGTGTCGGGCGTGCTGTGTTTCGCCGGGCGCTACCTTGTGCTGCGCTGGCATGG CCGGCCGGTGAAAGCGGGGGCGTGA
Upstream 100 bases:
>100_bases GAATCCACACGCGAACTCGTGCGACACCGATCGTGCGGGCGCTTTCCGGCCATGCGCGTCACACGCGCCGCCGGCACGCA AAAAAGTTGCGCGTACAATC
Downstream 100 bases:
>100_bases GCGGAGGCCGCAATGACCGCGGCATGAAAAAACGCCACCGCGCGATGCGTCGGTGGCGTTTTTTTTCGGGCGGTCGGAAA GTGGCGAGCGCCTGACCGTG
Product: Bcr/CflA subfamily drug resistance transporter
Products: Proton [Cytoplasm]; multidrug [Periplasm] [C]
Alternate protein names: Sulfonamide resistance protein [H]
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MGLSAVRGAASRLHRHARPDARGPPFRIPMSHVVRRRPDARLILLLGALAACGPIATDMYLPSLPSIADGFSVSPGAAQR TLTSFMAGFSIGMLLYGPLSDTWGRRPVLLGGIALFTLASIGCFVSGSIDMLIIVRFLQALGAGAASVLARAIARDAHEP TDAAKVLSMVAIVTAVGPLLAPLIGGQILRFAGWRGVFVVLAAFGALCAATAYLRVPETWPKERRKSAAVLASFASYGRI LSDPVAWGHMLCGGMAFAAMFSYITATPFVYIEYFHVSPQHYGLLFGLNVVGIMIGNFANTRLVGRIGSLRLIAAASLVS CIASLAVALVALTGWGGLWSIVVCLFFVVGVVGILSANCTTDLMHRYPHNAGASAAVFGAMQLALGALASVAIGALADGT PFAMGVTIGVSGVLCFAGRYLVLRWHGRPVKAGA
Sequences:
>Translated_434_residues MGLSAVRGAASRLHRHARPDARGPPFRIPMSHVVRRRPDARLILLLGALAACGPIATDMYLPSLPSIADGFSVSPGAAQR TLTSFMAGFSIGMLLYGPLSDTWGRRPVLLGGIALFTLASIGCFVSGSIDMLIIVRFLQALGAGAASVLARAIARDAHEP TDAAKVLSMVAIVTAVGPLLAPLIGGQILRFAGWRGVFVVLAAFGALCAATAYLRVPETWPKERRKSAAVLASFASYGRI LSDPVAWGHMLCGGMAFAAMFSYITATPFVYIEYFHVSPQHYGLLFGLNVVGIMIGNFANTRLVGRIGSLRLIAAASLVS CIASLAVALVALTGWGGLWSIVVCLFFVVGVVGILSANCTTDLMHRYPHNAGASAAVFGAMQLALGALASVAIGALADGT PFAMGVTIGVSGVLCFAGRYLVLRWHGRPVKAGA >Mature_433_residues GLSAVRGAASRLHRHARPDARGPPFRIPMSHVVRRRPDARLILLLGALAACGPIATDMYLPSLPSIADGFSVSPGAAQRT LTSFMAGFSIGMLLYGPLSDTWGRRPVLLGGIALFTLASIGCFVSGSIDMLIIVRFLQALGAGAASVLARAIARDAHEPT DAAKVLSMVAIVTAVGPLLAPLIGGQILRFAGWRGVFVVLAAFGALCAATAYLRVPETWPKERRKSAAVLASFASYGRIL SDPVAWGHMLCGGMAFAAMFSYITATPFVYIEYFHVSPQHYGLLFGLNVVGIMIGNFANTRLVGRIGSLRLIAAASLVSC IASLAVALVALTGWGGLWSIVVCLFFVVGVVGILSANCTTDLMHRYPHNAGASAAVFGAMQLALGALASVAIGALADGTP FAMGVTIGVSGVLCFAGRYLVLRWHGRPVKAGA
Specific function: Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance. Probable membrane translocase [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Bcr/CmlA family [H]
Homologues:
Organism=Escherichia coli, GI1788509, Length=397, Percent_Identity=34.5088161209068, Blast_Score=243, Evalue=2e-65, Organism=Escherichia coli, GI48994889, Length=396, Percent_Identity=27.7777777777778, Blast_Score=139, Evalue=3e-34, Organism=Escherichia coli, GI87082312, Length=349, Percent_Identity=29.2263610315186, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1790146, Length=257, Percent_Identity=28.0155642023346, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1787065, Length=257, Percent_Identity=26.8482490272374, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI1790794, Length=223, Percent_Identity=25.1121076233184, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1790195, Length=163, Percent_Identity=29.4478527607362, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322071, Length=215, Percent_Identity=26.046511627907, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6319657, Length=198, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324264, Length=178, Percent_Identity=24.1573033707865, Blast_Score=63, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004812 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004734 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 45234; Mature: 45103
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLSAVRGAASRLHRHARPDARGPPFRIPMSHVVRRRPDARLILLLGALAACGPIATDMY CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH LPSLPSIADGFSVSPGAAQRTLTSFMAGFSIGMLLYGPLSDTWGRRPVLLGGIALFTLAS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHH IGCFVSGSIDMLIIVRFLQALGAGAASVLARAIARDAHEPTDAAKVLSMVAIVTAVGPLL HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH APLIGGQILRFAGWRGVFVVLAAFGALCAATAYLRVPETWPKERRKSAAVLASFASYGRI HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LSDPVAWGHMLCGGMAFAAMFSYITATPFVYIEYFHVSPQHYGLLFGLNVVGIMIGNFAN HCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCC TRLVGRIGSLRLIAAASLVSCIASLAVALVALTGWGGLWSIVVCLFFVVGVVGILSANCT HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCH TDLMHRYPHNAGASAAVFGAMQLALGALASVAIGALADGTPFAMGVTIGVSGVLCFAGRY HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCE LVLRWHGRPVKAGA EEEEECCCCCCCCC >Mature Secondary Structure GLSAVRGAASRLHRHARPDARGPPFRIPMSHVVRRRPDARLILLLGALAACGPIATDMY CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH LPSLPSIADGFSVSPGAAQRTLTSFMAGFSIGMLLYGPLSDTWGRRPVLLGGIALFTLAS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHH IGCFVSGSIDMLIIVRFLQALGAGAASVLARAIARDAHEPTDAAKVLSMVAIVTAVGPLL HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH APLIGGQILRFAGWRGVFVVLAAFGALCAATAYLRVPETWPKERRKSAAVLASFASYGRI HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LSDPVAWGHMLCGGMAFAAMFSYITATPFVYIEYFHVSPQHYGLLFGLNVVGIMIGNFAN HCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCC TRLVGRIGSLRLIAAASLVSCIASLAVALVALTGWGGLWSIVVCLFFVVGVVGILSANCT HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCH TDLMHRYPHNAGASAAVFGAMQLALGALASVAIGALADGTPFAMGVTIGVSGVLCFAGRY HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCE LVLRWHGRPVKAGA EEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; multidrug [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + multidrug [Cytoplasm] = Proton [Cytoplasm] + multidrug [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8486276; 9278503; 2694948 [H]