| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350850
Identifier: 115350850
GI number: 115350850
Start: 883778
End: 884122
Strand: Direct
Name: 115350850
Synonym: Bamb_0796
Alternate gene names: NA
Gene position: 883778-884122 (Clockwise)
Preceding gene: 115350848
Following gene: 115350853
Centisome position: 24.85
GC content: 60.0
Gene sequence:
>345_bases ATGTCCGATTTCATCACCGTTCTGCGCGAAACCTGCCCGACCCCGGTCCTTGATGCCACCAAATGGAAGCGCATCGGCGG CGATCCGCACACCGTGAACCTCAACGCCTACCTGTCCGAGGACGGCAGCAAGATCATGGGCACGTGGATCTGCACGCCGG GCAAGTTCGAGGTGAACTACGAGAAGTGGGAGTACTGCCACTTCCTCGACGGCTACTGCATCATCACGCCGGAAGGCGAA GAGGCGGTGCACCTGAAAGCCGGCGACGTGTTCGTCATCGAGCCCGGCATGAAAGGGACTTGGGAAGTGGTGGAGACGGT GCGCAAGTATTTCGTCTTCGCCTGA
Upstream 100 bases:
>100_bases GTCGAAATTAGACGAGTCAGTGTCGGAACCATACAAGCCCCGATGCGGCTTTCGAACTAACGTGACAGACCTCTCATCCG ATCGTAAGTCTGGAGCCGAC
Downstream 100 bases:
>100_bases CGCGCCCGCATGACGCGTCATTCCTCCGGGATTTCGGCAGGAATGGCGGTCTCGCGGATTCCGGTTCAGTAAACTCGTTC CGGTTCGGGAACAGCTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 114; Mature: 113
Protein sequence:
>114_residues MSDFITVLRETCPTPVLDATKWKRIGGDPHTVNLNAYLSEDGSKIMGTWICTPGKFEVNYEKWEYCHFLDGYCIITPEGE EAVHLKAGDVFVIEPGMKGTWEVVETVRKYFVFA
Sequences:
>Translated_114_residues MSDFITVLRETCPTPVLDATKWKRIGGDPHTVNLNAYLSEDGSKIMGTWICTPGKFEVNYEKWEYCHFLDGYCIITPEGE EAVHLKAGDVFVIEPGMKGTWEVVETVRKYFVFA >Mature_113_residues SDFITVLRETCPTPVLDATKWKRIGGDPHTVNLNAYLSEDGSKIMGTWICTPGKFEVNYEKWEYCHFLDGYCIITPEGEE AVHLKAGDVFVIEPGMKGTWEVVETVRKYFVFA
Specific function: Unknown
COG id: COG3450
COG function: function code R; Predicted enzyme of the cupin superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12969; Mature: 12838
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDFITVLRETCPTPVLDATKWKRIGGDPHTVNLNAYLSEDGSKIMGTWICTPGKFEVNY CCHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCEEEECC EKWEYCHFLDGYCIITPEGEEAVHLKAGDVFVIEPGMKGTWEVVETVRKYFVFA CCEEEEEEECCEEEEECCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHEECC >Mature Secondary Structure SDFITVLRETCPTPVLDATKWKRIGGDPHTVNLNAYLSEDGSKIMGTWICTPGKFEVNY CHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCEEEECC EKWEYCHFLDGYCIITPEGEEAVHLKAGDVFVIEPGMKGTWEVVETVRKYFVFA CCEEEEEEECCEEEEECCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA