Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115350773

Identifier: 115350773

GI number: 115350773

Start: 800018

End: 802105

Strand: Direct

Name: 115350773

Synonym: Bamb_0719

Alternate gene names: NA

Gene position: 800018-802105 (Clockwise)

Preceding gene: 115350772

Following gene: 115350778

Centisome position: 22.49

GC content: 71.65

Gene sequence:

>2088_bases
ATGACGACGCACGGGTGGGGCACTCGGATTCTTCTCGGCGCGGCGCTGGCCGCGCTCACATTGCTCGGCGGCTGCAACGA
CGCCGATTCGGGCGAGCGCAACCGGTTGCCCGGTTTCGTGTCCGGCAGCGTGCGCACGACCGCCTATGACGGCACGAGCG
ACGACCTGCTGACGGCTGGCCTCGGCAAGACGGGCCTCGCCTCCACGGCGCCCGCGTTCGCGAATCCGTCCCGGCCGACG
AGCGCCGAGCTGCGCCGGCTCGCGATCTGGTCGAACTACCGCGCGCTCGTCGACATGAGCGCGAACGGCGGCTACGGCCG
CTTCTGGGGGCCGAACGTCGACCTCGACGGCAACGCCACGCTCGGCGAAGGCAAGATCCCCGGCACCGAATATCTCGCGT
ACTCCGACGACGGCAGCGGCCGCAAGAACGTGACGCTGCTCGTGCAGGTGCCCGCCAGCTTCGATCCGAAGCAGCCGTGC
ATCGTCACCGCGACGTCGTCGGGGTCGCGCGGCGTGTACGGCGCGATTTCGGCGGCCGGCGAGTGGGGCCTCAAGCGCGG
CTGCGCGGTCGCATACAACGACAAGGGCGGCGGCAACGGCGCGCACGAGCTCGGCTCCGACACGATCACGCTGATCGACG
GCACGCTCGCCAACGCGGTGCTCGCCGGCAATGCCAGCCTCTTTACCGCGAACGTGACGAGCGGCGACCTGGCCGCGTTC
AACGGCCGCTTCCCGAACCGCTACGCGTTCAAGCACGCGCATTCGCAGCAGAATCCCGAGCAGGACTGGGGGCACGCGAC
GCTGCAGGCGGTCGAATTCGCGTACTGGGCGCTCAACGAGCAGTTCGGGCCGGTACTCGACAGCTCGCATCACGGCGTGC
GCTACCACCCGGGCGACATCACGACGATCGCCGCGTCCGTCAGCAACGGCGGCGGTGCGGCGCTCGCGGCGGCCGAGCAG
GACACGCGCCGCTGGATCACCGCGGTCGTGGTCGGCGAGCCGCAGGTCAACGTGCGGATGTCGCCGAACGCGATCGTGCG
CGAGGGCGGCCAGCCGGCACCGTCGTTCGGCCGGCCGCTGGCCGACTACGCGACGCTCGCGAACCTGCTGCAGCCGTGCG
CGGCCGCGTCCGCGTCGCTCGCGGGCGAGCCGTACCTGAGCGGGCTGCCGGCCGCCACCACGCAGTCGATCCGCACGCAG
CGCTGCGCGACGCTCGCCGCGGCGGGGCTCGTGTCGGGCGCCGACACGCAGAGCCAGGCCGCCGACGCGCTCGCGCAGCT
GCATGCGGCCGGCTATCTCGCCGATTCCGACCTGCTGCAGGCGTCGATGTGGGATTCGCAGGCGATTCCGGCGATCGCGG
TCACCTATGCGAACGCGTACACGCGCTCGCGCGTGACCGACAATCTGTGCAATTTCAGCTTCGCGACCACCAGCGCGCCG
ACCGGCACGGTCGCCTCGCCCGCCGCGTCGCCGATGCCGGCCATCTTCGGCGTCGGCAACGGCGTGCCGCCGACGGGCGG
CATCGACCTCGTGTTCAACACGGGCGCGGGCGTCGATCACCGGCTCGCGACCCCCGACGCGAGCTTCGCGGGCGCGCTGT
GCCTGCGCCAGCTGTGGACCAACGGGATGCTCGACATGCCGGCGAACGTCGACGCCGTGCGCGTGAACGCGAACCTGCAG
GGCAAGCCCGCGATCATCGTGCAGGGCCGCAGCGACGCGCTCGTGCCGGTGAACCACGCGTCGCGCGCGTATGTCGCGCA
GAACAGCATCAGCGAAGGCGCCCGCAGCCAGCTCGTGTTCTACGAGGTGACGAACGGGCAGCACTTCGACGCGTTCCTGC
CCGTCGCGGGCTTCGATACGCGCTTCGTGCCGGTCCACTACTACAACGTGCAGGCGCTGAACCTGATGTGGCGCCATCTG
AAGAACGGCGCCGCGCTGCCGCCGTCGCAGGTGATCCGCACGGTGCCGCGCGGCGGCACGCCGGGCGCCGCACCGGCGCT
GACGAGCGCGAACCTGCCGCCGATCGCGACGTCGCCCGGCGCGAACGCGATCACGGCCGGCGCCGGCGCGATCGACGTGC
CGCTCTGA

Upstream 100 bases:

>100_bases
CGGAATATCAGGAGCGGCCCGGTGTTTTCCCGACAGGCCGCGAGCCGCGCACGACGCAGCGGCGCAGCGATAGCGATATC
CATACTGATAGGGGGCGGCA

Downstream 100 bases:

>100_bases
GGGCATTCGCCGCGCCGCAGTCATGAAGCCGGACGGTCGTCCGGCTTTTTCTTTTTCCGCGTCGGGAATCGACGACGGCA
TCGTCGCGAACCGTACCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: 3HB-oligomer hydrolase; 3HBOH

Number of amino acids: Translated: 695; Mature: 694

Protein sequence:

>695_residues
MTTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAGLGKTGLASTAPAFANPSRPT
SAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNATLGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPC
IVTATSSGSRGVYGAISAAGEWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAF
NGRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDITTIAASVSNGGGAALAAAEQ
DTRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPLADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQ
RCATLAAAGLVSGADTQSQAADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAP
TGTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWTNGMLDMPANVDAVRVNANLQ
GKPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVFYEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHL
KNGAALPPSQVIRTVPRGGTPGAAPALTSANLPPIATSPGANAITAGAGAIDVPL

Sequences:

>Translated_695_residues
MTTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAGLGKTGLASTAPAFANPSRPT
SAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNATLGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPC
IVTATSSGSRGVYGAISAAGEWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAF
NGRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDITTIAASVSNGGGAALAAAEQ
DTRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPLADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQ
RCATLAAAGLVSGADTQSQAADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAP
TGTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWTNGMLDMPANVDAVRVNANLQ
GKPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVFYEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHL
KNGAALPPSQVIRTVPRGGTPGAAPALTSANLPPIATSPGANAITAGAGAIDVPL
>Mature_694_residues
TTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAGLGKTGLASTAPAFANPSRPTS
AELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNATLGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPCI
VTATSSGSRGVYGAISAAGEWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAFN
GRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDITTIAASVSNGGGAALAAAEQD
TRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPLADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQR
CATLAAAGLVSGADTQSQAADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAPT
GTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWTNGMLDMPANVDAVRVNANLQG
KPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVFYEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHLK
NGAALPPSQVIRTVPRGGTPGAAPALTSANLPPIATSPGANAITAGAGAIDVPL

Specific function: Participates in the degradation of poly-3- hydroxybutyrate (PHB). It works downstream of poly(3- hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB-oligomers) into 3HB-monomers

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HBOH_BURCM (Q0BHU5)

Other databases:

- EMBL:   CP000440
- RefSeq:   YP_772612.1
- STRING:   Q0BHU5
- GeneID:   4309007
- GenomeReviews:   CP000440_GR
- KEGG:   bam:Bamb_0719
- NMPDR:   fig|339670.3.peg.3091
- eggNOG:   NOG67905
- HOGENOM:   HBG288747
- OMA:   NPEKDWG
- ProtClustDB:   CLSK896937
- BioCyc:   BAMB339670:BAMB_0719-MONOMER
- HAMAP:   MF_01906
- InterPro:   IPR016582
- PIRSF:   PIRSF011409

Pfam domain/function: PF10605 3HBOH

EC number: =3.1.1.22

Molecular weight: Translated: 71705; Mature: 71573

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: ACT_SITE 308-308

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAG
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCCCEECC
LGKTGLASTAPAFANPSRPTSAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNAT
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
LGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPCIVTATSSGSRGVYGAISAAG
CCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCC
EWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAF
CCCCCCCCEEEECCCCCCCCHHHCCCCEEEEEECHHHHEEEECCCEEEEEECCCCCEEEE
NGRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDI
CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCE
TTIAASVSNGGGAALAAAEQDTRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPL
EEEEEECCCCCCEEEEECHHHCCEEEEEEEECCCCEEEEECCCHHHHCCCCCCCHHCCCH
ADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQRCATLAAAGLVSGADTQSQA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
ADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAP
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEEECCCC
TGTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWT
CCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHH
NGMLDMPANVDAVRVNANLQGKPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVF
CCCEECCCCCEEEEEECCCCCCCEEEEECCCCCEEECCCCCCEEEECCCHHCCCCCEEEE
YEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHLKNGAALPPSQVIRTVPRGGT
EEECCCCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
PGAAPALTSANLPPIATSPGANAITAGAGAIDVPL
CCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCC
>Mature Secondary Structure 
TTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAG
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCCCEECC
LGKTGLASTAPAFANPSRPTSAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNAT
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
LGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPCIVTATSSGSRGVYGAISAAG
CCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCC
EWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAF
CCCCCCCCEEEECCCCCCCCHHHCCCCEEEEEECHHHHEEEECCCEEEEEECCCCCEEEE
NGRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDI
CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCE
TTIAASVSNGGGAALAAAEQDTRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPL
EEEEEECCCCCCEEEEECHHHCCEEEEEEEECCCCEEEEECCCHHHHCCCCCCCHHCCCH
ADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQRCATLAAAGLVSGADTQSQA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
ADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAP
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEEECCCC
TGTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWT
CCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHH
NGMLDMPANVDAVRVNANLQGKPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVF
CCCEECCCCCEEEEEECCCCCCCEEEEECCCCCEEECCCCCCEEEECCCHHCCCCCEEEE
YEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHLKNGAALPPSQVIRTVPRGGT
EEECCCCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
PGAAPALTSANLPPIATSPGANAITAGAGAIDVPL
CCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA