| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350773
Identifier: 115350773
GI number: 115350773
Start: 800018
End: 802105
Strand: Direct
Name: 115350773
Synonym: Bamb_0719
Alternate gene names: NA
Gene position: 800018-802105 (Clockwise)
Preceding gene: 115350772
Following gene: 115350778
Centisome position: 22.49
GC content: 71.65
Gene sequence:
>2088_bases ATGACGACGCACGGGTGGGGCACTCGGATTCTTCTCGGCGCGGCGCTGGCCGCGCTCACATTGCTCGGCGGCTGCAACGA CGCCGATTCGGGCGAGCGCAACCGGTTGCCCGGTTTCGTGTCCGGCAGCGTGCGCACGACCGCCTATGACGGCACGAGCG ACGACCTGCTGACGGCTGGCCTCGGCAAGACGGGCCTCGCCTCCACGGCGCCCGCGTTCGCGAATCCGTCCCGGCCGACG AGCGCCGAGCTGCGCCGGCTCGCGATCTGGTCGAACTACCGCGCGCTCGTCGACATGAGCGCGAACGGCGGCTACGGCCG CTTCTGGGGGCCGAACGTCGACCTCGACGGCAACGCCACGCTCGGCGAAGGCAAGATCCCCGGCACCGAATATCTCGCGT ACTCCGACGACGGCAGCGGCCGCAAGAACGTGACGCTGCTCGTGCAGGTGCCCGCCAGCTTCGATCCGAAGCAGCCGTGC ATCGTCACCGCGACGTCGTCGGGGTCGCGCGGCGTGTACGGCGCGATTTCGGCGGCCGGCGAGTGGGGCCTCAAGCGCGG CTGCGCGGTCGCATACAACGACAAGGGCGGCGGCAACGGCGCGCACGAGCTCGGCTCCGACACGATCACGCTGATCGACG GCACGCTCGCCAACGCGGTGCTCGCCGGCAATGCCAGCCTCTTTACCGCGAACGTGACGAGCGGCGACCTGGCCGCGTTC AACGGCCGCTTCCCGAACCGCTACGCGTTCAAGCACGCGCATTCGCAGCAGAATCCCGAGCAGGACTGGGGGCACGCGAC GCTGCAGGCGGTCGAATTCGCGTACTGGGCGCTCAACGAGCAGTTCGGGCCGGTACTCGACAGCTCGCATCACGGCGTGC GCTACCACCCGGGCGACATCACGACGATCGCCGCGTCCGTCAGCAACGGCGGCGGTGCGGCGCTCGCGGCGGCCGAGCAG GACACGCGCCGCTGGATCACCGCGGTCGTGGTCGGCGAGCCGCAGGTCAACGTGCGGATGTCGCCGAACGCGATCGTGCG CGAGGGCGGCCAGCCGGCACCGTCGTTCGGCCGGCCGCTGGCCGACTACGCGACGCTCGCGAACCTGCTGCAGCCGTGCG CGGCCGCGTCCGCGTCGCTCGCGGGCGAGCCGTACCTGAGCGGGCTGCCGGCCGCCACCACGCAGTCGATCCGCACGCAG CGCTGCGCGACGCTCGCCGCGGCGGGGCTCGTGTCGGGCGCCGACACGCAGAGCCAGGCCGCCGACGCGCTCGCGCAGCT GCATGCGGCCGGCTATCTCGCCGATTCCGACCTGCTGCAGGCGTCGATGTGGGATTCGCAGGCGATTCCGGCGATCGCGG TCACCTATGCGAACGCGTACACGCGCTCGCGCGTGACCGACAATCTGTGCAATTTCAGCTTCGCGACCACCAGCGCGCCG ACCGGCACGGTCGCCTCGCCCGCCGCGTCGCCGATGCCGGCCATCTTCGGCGTCGGCAACGGCGTGCCGCCGACGGGCGG CATCGACCTCGTGTTCAACACGGGCGCGGGCGTCGATCACCGGCTCGCGACCCCCGACGCGAGCTTCGCGGGCGCGCTGT GCCTGCGCCAGCTGTGGACCAACGGGATGCTCGACATGCCGGCGAACGTCGACGCCGTGCGCGTGAACGCGAACCTGCAG GGCAAGCCCGCGATCATCGTGCAGGGCCGCAGCGACGCGCTCGTGCCGGTGAACCACGCGTCGCGCGCGTATGTCGCGCA GAACAGCATCAGCGAAGGCGCCCGCAGCCAGCTCGTGTTCTACGAGGTGACGAACGGGCAGCACTTCGACGCGTTCCTGC CCGTCGCGGGCTTCGATACGCGCTTCGTGCCGGTCCACTACTACAACGTGCAGGCGCTGAACCTGATGTGGCGCCATCTG AAGAACGGCGCCGCGCTGCCGCCGTCGCAGGTGATCCGCACGGTGCCGCGCGGCGGCACGCCGGGCGCCGCACCGGCGCT GACGAGCGCGAACCTGCCGCCGATCGCGACGTCGCCCGGCGCGAACGCGATCACGGCCGGCGCCGGCGCGATCGACGTGC CGCTCTGA
Upstream 100 bases:
>100_bases CGGAATATCAGGAGCGGCCCGGTGTTTTCCCGACAGGCCGCGAGCCGCGCACGACGCAGCGGCGCAGCGATAGCGATATC CATACTGATAGGGGGCGGCA
Downstream 100 bases:
>100_bases GGGCATTCGCCGCGCCGCAGTCATGAAGCCGGACGGTCGTCCGGCTTTTTCTTTTTCCGCGTCGGGAATCGACGACGGCA TCGTCGCGAACCGTACCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: 3HB-oligomer hydrolase; 3HBOH
Number of amino acids: Translated: 695; Mature: 694
Protein sequence:
>695_residues MTTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAGLGKTGLASTAPAFANPSRPT SAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNATLGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPC IVTATSSGSRGVYGAISAAGEWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAF NGRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDITTIAASVSNGGGAALAAAEQ DTRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPLADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQ RCATLAAAGLVSGADTQSQAADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAP TGTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWTNGMLDMPANVDAVRVNANLQ GKPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVFYEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHL KNGAALPPSQVIRTVPRGGTPGAAPALTSANLPPIATSPGANAITAGAGAIDVPL
Sequences:
>Translated_695_residues MTTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAGLGKTGLASTAPAFANPSRPT SAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNATLGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPC IVTATSSGSRGVYGAISAAGEWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAF NGRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDITTIAASVSNGGGAALAAAEQ DTRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPLADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQ RCATLAAAGLVSGADTQSQAADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAP TGTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWTNGMLDMPANVDAVRVNANLQ GKPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVFYEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHL KNGAALPPSQVIRTVPRGGTPGAAPALTSANLPPIATSPGANAITAGAGAIDVPL >Mature_694_residues TTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAGLGKTGLASTAPAFANPSRPTS AELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNATLGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPCI VTATSSGSRGVYGAISAAGEWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAFN GRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDITTIAASVSNGGGAALAAAEQD TRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPLADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQR CATLAAAGLVSGADTQSQAADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAPT GTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWTNGMLDMPANVDAVRVNANLQG KPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVFYEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHLK NGAALPPSQVIRTVPRGGTPGAAPALTSANLPPIATSPGANAITAGAGAIDVPL
Specific function: Participates in the degradation of poly-3- hydroxybutyrate (PHB). It works downstream of poly(3- hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB-oligomers) into 3HB-monomers
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HBOH_BURCM (Q0BHU5)
Other databases:
- EMBL: CP000440 - RefSeq: YP_772612.1 - STRING: Q0BHU5 - GeneID: 4309007 - GenomeReviews: CP000440_GR - KEGG: bam:Bamb_0719 - NMPDR: fig|339670.3.peg.3091 - eggNOG: NOG67905 - HOGENOM: HBG288747 - OMA: NPEKDWG - ProtClustDB: CLSK896937 - BioCyc: BAMB339670:BAMB_0719-MONOMER - HAMAP: MF_01906 - InterPro: IPR016582 - PIRSF: PIRSF011409
Pfam domain/function: PF10605 3HBOH
EC number: =3.1.1.22
Molecular weight: Translated: 71705; Mature: 71573
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: ACT_SITE 308-308
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAG CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCCCEECC LGKTGLASTAPAFANPSRPTSAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNAT CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC LGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPCIVTATSSGSRGVYGAISAAG CCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCC EWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAF CCCCCCCCEEEECCCCCCCCHHHCCCCEEEEEECHHHHEEEECCCEEEEEECCCCCEEEE NGRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDI CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCE TTIAASVSNGGGAALAAAEQDTRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPL EEEEEECCCCCCEEEEECHHHCCEEEEEEEECCCCEEEEECCCHHHHCCCCCCCHHCCCH ADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQRCATLAAAGLVSGADTQSQA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH ADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAP HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEEECCCC TGTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWT CCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHH NGMLDMPANVDAVRVNANLQGKPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVF CCCEECCCCCEEEEEECCCCCCCEEEEECCCCCEEECCCCCCEEEECCCHHCCCCCEEEE YEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHLKNGAALPPSQVIRTVPRGGT EEECCCCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC PGAAPALTSANLPPIATSPGANAITAGAGAIDVPL CCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCC >Mature Secondary Structure TTHGWGTRILLGAALAALTLLGGCNDADSGERNRLPGFVSGSVRTTAYDGTSDDLLTAG CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEECCCCCCCEECC LGKTGLASTAPAFANPSRPTSAELRRLAIWSNYRALVDMSANGGYGRFWGPNVDLDGNAT CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC LGEGKIPGTEYLAYSDDGSGRKNVTLLVQVPASFDPKQPCIVTATSSGSRGVYGAISAAG CCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCC EWGLKRGCAVAYNDKGGGNGAHELGSDTITLIDGTLANAVLAGNASLFTANVTSGDLAAF CCCCCCCCEEEECCCCCCCCHHHCCCCEEEEEECHHHHEEEECCCEEEEEECCCCCEEEE NGRFPNRYAFKHAHSQQNPEQDWGHATLQAVEFAYWALNEQFGPVLDSSHHGVRYHPGDI CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCE TTIAASVSNGGGAALAAAEQDTRRWITAVVVGEPQVNVRMSPNAIVREGGQPAPSFGRPL EEEEEECCCCCCEEEEECHHHCCEEEEEEEECCCCEEEEECCCHHHHCCCCCCCHHCCCH ADYATLANLLQPCAAASASLAGEPYLSGLPAATTQSIRTQRCATLAAAGLVSGADTQSQA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH ADALAQLHAAGYLADSDLLQASMWDSQAIPAIAVTYANAYTRSRVTDNLCNFSFATTSAP HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEEECCCC TGTVASPAASPMPAIFGVGNGVPPTGGIDLVFNTGAGVDHRLATPDASFAGALCLRQLWT CCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHH NGMLDMPANVDAVRVNANLQGKPAIIVQGRSDALVPVNHASRAYVAQNSISEGARSQLVF CCCEECCCCCEEEEEECCCCCCCEEEEECCCCCEEECCCCCCEEEECCCHHCCCCCEEEE YEVTNGQHFDAFLPVAGFDTRFVPVHYYNVQALNLMWRHLKNGAALPPSQVIRTVPRGGT EEECCCCCCEEEEEECCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC PGAAPALTSANLPPIATSPGANAITAGAGAIDVPL CCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA