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The map label for this gene is ykgD [C]

Identifier: 115350721

GI number: 115350721

Start: 748473

End: 749423

Strand: Direct

Name: ykgD [C]

Synonym: Bamb_0667

Alternate gene names: 115350721

Gene position: 748473-749423 (Clockwise)

Preceding gene: 115350717

Following gene: 115350722

Centisome position: 21.04

GC content: 72.34

Gene sequence:

>951_bases
ATGGACGCGTTGAGTCAACTGCTGTCGCTGGGCCGCAGCCATGTCGAGCTCGACGTGCGCTGCCTGCTCGACGGCCCGTT
CGCGATGCCGCACGACCCGTTGCCGCCCGGCGAGGCGGCGTTTCACCTGCTGCTGTCCGGAACGTGCCGGTTGCGCACGG
CCGACGGGCGCACGCTGCGGCTCGTCGACGGCGACTTCGTGCTGCTGCCCGCGGGCGACGCGCACGATTTGTCGGATGGA
GGCGCGGGCGGCGCCAGGTCGGTCGCGTTACTGCGCGAACCGCGCGCGGCGGGCGGCGCGGTGCTGCCGGTCAAGTCGAA
CCGCGATCCCGCGGATGAGGGCGAGGCGGGCGTCGATCTGCTTTGCGGACGCTTCGTCTACGCACGCGGGGCCGGTGAAT
TGCTGATGCGCACGCTGCCGCGCGTGCTGCACGTCGGGCTGCGAGAGGCGTCGTCGGGGCTGGCGTCGCTGCAACTGCTG
ACGAGCGTGCTGCGCGCGGAGGCATCGAATGCGCAGCCCGGTGCGCGTGCGATCGTGAACGCGCTCGGACAGGCGCTGCT
CGCCTATGCGTTGCGCGCGTACGGTCGCGATGCGCGCGTGCCGGCCGGCTGGCTCGCGCTGGCTGCCGATATGCGGCTCG
GTTCGTCGGTCCAGGCTGTGCTGCAGGCGCCGGCGAAACCGTGGACGGTCGAATCGCTCGGCGCGGCGTCGGCGATGTCG
CGCGCGACCTATGCGCGGCATTTCCGCGAGAAGGCCGGGATGAGCGTCGGCGCGTTCGTCGCGCAGATCCGGATGATGCA
TGCGTGCGCGCTGCTGCAGGACACGCAGCGCGGGCAGGCGGAGATCGGGCAGGCGGTCGGCTATCAGTCGGAGGCGGCGT
TCGGCAAGGCGTTTCGCGCGGTGCTCGGCACGACGCCGGGGCGCTGGCGGCGCGCGCAGCGCGGCATGTAA

Upstream 100 bases:

>100_bases
TCGGCGGATGCCGCGATCTCGGGCGATGCAGGGCCTATTCTGATCGCTCGCACTGAGGGTTTCGATACGCTAGAGTGTCA
ATTTTTAGCGCAAACGTCTC

Downstream 100 bases:

>100_bases
GACTGCAAGCGAGGCTGTCGTGGCACGCGCCAAAGCTGCTACCATGCGCGAAACGCAGTTCAACGAAAAACGATTTCGAA
CAAGAAGAAAGAGAGGGCAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLLLSGTCRLRTADGRTLRLVDGDFVLLPAGDAHDLSDG
GAGGARSVALLREPRAAGGAVLPVKSNRDPADEGEAGVDLLCGRFVYARGAGELLMRTLPRVLHVGLREASSGLASLQLL
TSVLRAEASNAQPGARAIVNALGQALLAYALRAYGRDARVPAGWLALAADMRLGSSVQAVLQAPAKPWTVESLGAASAMS
RATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRAQRGM

Sequences:

>Translated_316_residues
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLLLSGTCRLRTADGRTLRLVDGDFVLLPAGDAHDLSDG
GAGGARSVALLREPRAAGGAVLPVKSNRDPADEGEAGVDLLCGRFVYARGAGELLMRTLPRVLHVGLREASSGLASLQLL
TSVLRAEASNAQPGARAIVNALGQALLAYALRAYGRDARVPAGWLALAADMRLGSSVQAVLQAPAKPWTVESLGAASAMS
RATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRAQRGM
>Mature_316_residues
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLLLSGTCRLRTADGRTLRLVDGDFVLLPAGDAHDLSDG
GAGGARSVALLREPRAAGGAVLPVKSNRDPADEGEAGVDLLCGRFVYARGAGELLMRTLPRVLHVGLREASSGLASLQLL
TSVLRAEASNAQPGARAIVNALGQALLAYALRAYGRDARVPAGWLALAADMRLGSSVQAVLQAPAKPWTVESLGAASAMS
RATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRAVLGTTPGRWRRAQRGM

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=316, Percent_Identity=27.2151898734177, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33235; Mature: 33235

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLLLSGTCRLRTADGRTLR
CHHHHHHHHCCCHHEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEE
LVDGDFVLLPAGDAHDLSDGGAGGARSVALLREPRAAGGAVLPVKSNRDPADEGEAGVDL
EECCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHH
LCGRFVYARGAGELLMRTLPRVLHVGLREASSGLASLQLLTSVLRAEASNAQPGARAIVN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ALGQALLAYALRAYGRDARVPAGWLALAADMRLGSSVQAVLQAPAKPWTVESLGAASAMS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHH
RATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
VLGTTPGRWRRAQRGM
HHCCCCHHHHHHHCCC
>Mature Secondary Structure
MDALSQLLSLGRSHVELDVRCLLDGPFAMPHDPLPPGEAAFHLLLSGTCRLRTADGRTLR
CHHHHHHHHCCCHHEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEE
LVDGDFVLLPAGDAHDLSDGGAGGARSVALLREPRAAGGAVLPVKSNRDPADEGEAGVDL
EECCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHH
LCGRFVYARGAGELLMRTLPRVLHVGLREASSGLASLQLLTSVLRAEASNAQPGARAIVN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ALGQALLAYALRAYGRDARVPAGWLALAADMRLGSSVQAVLQAPAKPWTVESLGAASAMS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHH
RATYARHFREKAGMSVGAFVAQIRMMHACALLQDTQRGQAEIGQAVGYQSEAAFGKAFRA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
VLGTTPGRWRRAQRGM
HHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]