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The map label for this gene is hslR [H]

Identifier: 115350695

GI number: 115350695

Start: 724061

End: 724534

Strand: Direct

Name: hslR [H]

Synonym: Bamb_0641

Alternate gene names: 115350695

Gene position: 724061-724534 (Clockwise)

Preceding gene: 115350694

Following gene: 115350698

Centisome position: 20.36

GC content: 68.57

Gene sequence:

>474_bases
ATGCGCACTGCGTTCGCCGTTCGAGCGGGCGGTCGGTCGCGATGGGGCGGCACGGCGGAGGCTGGCATGAATTACAAGAT
TTCGACGGAACCCGGCGCGCGGCTGCGCATCGACAAATGGCTGTGGGCGGCCCGCTTCTTCAAGACGCGCTCGCTCGCGT
CCGACGCGGTCGACAAGGGGCACGTGAAGATCGGCGGCGCGGCGGTGAAGCCGGCGAAGGACGTGCGCGTCGGCGACGAG
GTCGAGATTGCGATCGACGGTGTCGTCTGGCACATTGCCGTGCTGGGAATTTGCGACGTGCGCGGGCCGGCGAGCATCGC
GCAGACGCTCTACGCGGAAACGGAAGCCGGGCGCGTCGCGCGGCTCGCAGAACTGGAACGGCGCCGCACGTATCGGGAGC
CGGCGGCGGAACTGCACGGCCGGCCGACCAAGCGTGACCGGCGCATCATCGACAGATTTTCGGGTGGAAGCTGA

Upstream 100 bases:

>100_bases
TCGGCGAGATCGTCGCCGAGAATCTGCAGGGCTGGCCGGTGAAGGCCGCGCAGCCCGACATGGTGAACTGAAGGTGAACT
GAAATGACGGCCCAGCCCCT

Downstream 100 bases:

>100_bases
ACATCTGGTCGAACGTCGCCCGCGCGCTTCCGTATTCGGTCGTGCGGTCGGTGACGGCTCCGGACAGGCAGATGGTGGTG
GTGCCGGCAATCAGTACCAG

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MRTAFAVRAGGRSRWGGTAEAGMNYKISTEPGARLRIDKWLWAARFFKTRSLASDAVDKGHVKIGGAAVKPAKDVRVGDE
VEIAIDGVVWHIAVLGICDVRGPASIAQTLYAETEAGRVARLAELERRRTYREPAAELHGRPTKRDRRIIDRFSGGS

Sequences:

>Translated_157_residues
MRTAFAVRAGGRSRWGGTAEAGMNYKISTEPGARLRIDKWLWAARFFKTRSLASDAVDKGHVKIGGAAVKPAKDVRVGDE
VEIAIDGVVWHIAVLGICDVRGPASIAQTLYAETEAGRVARLAELERRRTYREPAAELHGRPTKRDRRIIDRFSGGS
>Mature_157_residues
MRTAFAVRAGGRSRWGGTAEAGMNYKISTEPGARLRIDKWLWAARFFKTRSLASDAVDKGHVKIGGAAVKPAKDVRVGDE
VEIAIDGVVWHIAVLGICDVRGPASIAQTLYAETEAGRVARLAELERRRTYREPAAELHGRPTKRDRRIIDRFSGGS

Specific function: May play a important role in binding of nucleic acid. More specific for RNA [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=130, Percent_Identity=33.8461538461538, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 17228; Mature: 17228

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAFAVRAGGRSRWGGTAEAGMNYKISTEPGARLRIDKWLWAARFFKTRSLASDAVDKG
CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCC
HVKIGGAAVKPAKDVRVGDEVEIAIDGVVWHIAVLGICDVRGPASIAQTLYAETEAGRVA
CEEECCEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
RLAELERRRTYREPAAELHGRPTKRDRRIIDRFSGGS
HHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MRTAFAVRAGGRSRWGGTAEAGMNYKISTEPGARLRIDKWLWAARFFKTRSLASDAVDKG
CCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCC
HVKIGGAAVKPAKDVRVGDEVEIAIDGVVWHIAVLGICDVRGPASIAQTLYAETEAGRVA
CEEECCEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
RLAELERRRTYREPAAELHGRPTKRDRRIIDRFSGGS
HHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]