| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is chiA [H]
Identifier: 115350690
GI number: 115350690
Start: 716697
End: 718994
Strand: Direct
Name: chiA [H]
Synonym: Bamb_0636
Alternate gene names: 115350690
Gene position: 716697-718994 (Clockwise)
Preceding gene: 115350689
Following gene: 115350693
Centisome position: 20.15
GC content: 70.02
Gene sequence:
>2298_bases ATGCGGACTTTCCGTTCAACCGGCGCCGTGCGCCCTCAACGAGCTCGTCCCATCTTGAAACCGATTCGTGTTGTCTTTGC CACGACGGCGCTGTCCGCTGCCGTCGTCGGACTGTTCTCCGCTTCCGCCGGCGCCGCCGAGCCGGCATCCACATCACTCA AGAACCTGTCGCGCGGCGACGATCAGTGCCTGGCCTGGCAACCGGCCGACAACGCAGCGGTGTTCGCCGCGTGCGACGGC GGCGCCGCGCAGGACTGGACCTTCGAGCCGCGCGGCGGCTTTCAGCGCATCGTCAACACCGGCGCGAGCGCCGCGCGCGG CACCAGGATGTGCCTGCATTCGGCCGCGGGCGATACCGGCATGGGGCGTGTGGCGGTCGGCGTGTGCGGCGAAGGCGACC AGACGATGCGCGACTGGCGGGCGGATCGCGGCCTCGACGGCCAGGTGGTGTTCGGCAACCGGTACCGGATCAACACCGGC CGGACGGCCGAGGTGCTGGCCCCGCGCGACGGCGGCGCCGGCGTCGCGATGCAGAACGTGCGCGGCCAGCCGTCGTCGGT CTGGAGGTCGGCCGTGTCGATTGCGCCGTCGCAGCGCCCGCTGCTCGGCGACAAGTCCGTGCTGCTGATGGTGACGCACT TCAACGACTCGAAGCCTGCCGACAGCGAGGTCGTGCGCAAGGCGGTGTTCGGCGACGGCGATGACCATTCGTCGCTGCGG CGCTATCTCGAGGTCGCGTCGCGCGGCAAGCTGACGCTGCACGGGCAGACGCTGGGCGGCGTCAATCTCGGCGACCGGCC CGCCACGTGCGATTCGGGCGCGATCCGCACGGCCGCGCGCAACGCGGCGCTCGCGCGCGGCGTGAACCCGGACAAGTTCA ACTACCTGTTCGTCGATCTGCCGAAAATGAGCAGTTGCAACTGGAGTGCTCTTGCCGCGACGCCGGGCAACTGGATTCTG TCGAACGCGAGCGGCCACGGCTACTGGATGTGGTCGCATGAGTTCGGTCACAACCTGGGCGCGAAGCATCCGGGTTCGCT CGTCGATTGCCCGACGCCGGGCGGCACGGTCGAGGTCGGCGGCGCGTGCCGCGTTGGCAAGGTCGATGATCCGTCGGACA CGATGGGCGGCGGCGGTCGGCGTTTGTATCCGGCGAGCTATCAACTGTTCGCCGGCTGGCTGGGCGAGGCCGACGTGCCC GAGATCAACGGCAGCGGCACCTATCGGCTCGCGCCGCTGTGGGGCGATGCGCCGGGCGCGAAGGCGTACCGTATCGCGCG CGCCGACGGTTCGACGCTGTGGCTCGAGTTTCGCCAGCCGCTACGCGGCTTCGACGACTGGAAGGCGGACGATTCGTTCG TCAACGGCGTGATCGTGCGCACCGTCGCGCATGGCGGCAACGTGCTGACGAACACGCTGGTCGACGCGACGCCCGGCAGC GCGAACGGCATGAAGGACGCGCCGCTGATGCCGGGCCATGCGCTGCACGACACGTTGTCGGGCAAGATCGTCACCGTCAA GTCGGTCGGGCCGGACGGCGCCGTGGTCGAGGTGAAGAATGACGGCCTGCTGATGCCCGACGCGGTGGTCACCGGCCCGC AGCAGGCGGCCGCGGGCACTGCGGTCGTGCTCTCGGGCGCGTCGTCGGCCGGCGACGCATTGCGCTACAGCTGGGTGGTG CCGGTCGGCGTCGACGCGCAGCCGAACGGCGCGGAATTGCGTTTTGTCGCGCCGACGCTCGAACAGGATCGCGACTACGC GTTCGAGCTGACCGTGGCGAACGACAAGGGCTATACGTCGCAGGCGACCCACGTCGTCACGGTGAAGGCGCAGGAGATCG TCGCGCCGCCGCGCGCCACGATCAGCGGGCCGGCGTCGGTCGACGGCGGCGCAGCCGTCACGCTGTCCGGCGCGTCGTCG ACGGGCAAGGGGTTGAAGTACGCGTGGACCGGGCCGGCCGGTGTGTCGATCACGCAGAACGGCGCGACCGCGACGTTCAC CGCGCCGAAGGCGACCGACGAGCGCCGCTATGCGTTCAAGCTGGTGGTGACCGACGCACTGGGCCGCAAGGCCGACGCGA CCCACGACGTGACCGTGCGTGCGTCCGCGGGCGAGGGCGCGGCTGCGTGGGATCCGAAGAAGACCTACGCGACACCGTGC CACGAGGTCAGCCATGCCGGCAAGACCTGGCTCAACGGCTGGTGGGTGCTTGGCGATGTGCCGGGCACGGGCGGCGAGTG GGGCGCATGGCGCGAGAAGGGCGTCGCGAACATGCACGCGATGTGCAAGAGCACGTAA
Upstream 100 bases:
>100_bases CGGGCCTTCGGCCGTGGCGTGGGTTGCCCTGGAGGGGGCCGGTTTCGCCGCGTTGAGATTCGTTTGAGATTGTTTGAGCG GAAATGTCTGCATCGAAAGA
Downstream 100 bases:
>100_bases GCGCAGCCGCGATGCGCCAGCGCGGGTGACCGCGCTGGCGCGAGTTGCGGCGCTGCGGAGCGATATGTTGCCGCGTTCCG GTTCCGGCCCGCTGCGGGCC
Product: carbohydrate-binding family V/XII protein
Products: NA
Alternate protein names: CHI-A [H]
Number of amino acids: Translated: 765; Mature: 765
Protein sequence:
>765_residues MRTFRSTGAVRPQRARPILKPIRVVFATTALSAAVVGLFSASAGAAEPASTSLKNLSRGDDQCLAWQPADNAAVFAACDG GAAQDWTFEPRGGFQRIVNTGASAARGTRMCLHSAAGDTGMGRVAVGVCGEGDQTMRDWRADRGLDGQVVFGNRYRINTG RTAEVLAPRDGGAGVAMQNVRGQPSSVWRSAVSIAPSQRPLLGDKSVLLMVTHFNDSKPADSEVVRKAVFGDGDDHSSLR RYLEVASRGKLTLHGQTLGGVNLGDRPATCDSGAIRTAARNAALARGVNPDKFNYLFVDLPKMSSCNWSALAATPGNWIL SNASGHGYWMWSHEFGHNLGAKHPGSLVDCPTPGGTVEVGGACRVGKVDDPSDTMGGGGRRLYPASYQLFAGWLGEADVP EINGSGTYRLAPLWGDAPGAKAYRIARADGSTLWLEFRQPLRGFDDWKADDSFVNGVIVRTVAHGGNVLTNTLVDATPGS ANGMKDAPLMPGHALHDTLSGKIVTVKSVGPDGAVVEVKNDGLLMPDAVVTGPQQAAAGTAVVLSGASSAGDALRYSWVV PVGVDAQPNGAELRFVAPTLEQDRDYAFELTVANDKGYTSQATHVVTVKAQEIVAPPRATISGPASVDGGAAVTLSGASS TGKGLKYAWTGPAGVSITQNGATATFTAPKATDERRYAFKLVVTDALGRKADATHDVTVRASAGEGAAAWDPKKTYATPC HEVSHAGKTWLNGWWVLGDVPGTGGEWGAWREKGVANMHAMCKST
Sequences:
>Translated_765_residues MRTFRSTGAVRPQRARPILKPIRVVFATTALSAAVVGLFSASAGAAEPASTSLKNLSRGDDQCLAWQPADNAAVFAACDG GAAQDWTFEPRGGFQRIVNTGASAARGTRMCLHSAAGDTGMGRVAVGVCGEGDQTMRDWRADRGLDGQVVFGNRYRINTG RTAEVLAPRDGGAGVAMQNVRGQPSSVWRSAVSIAPSQRPLLGDKSVLLMVTHFNDSKPADSEVVRKAVFGDGDDHSSLR RYLEVASRGKLTLHGQTLGGVNLGDRPATCDSGAIRTAARNAALARGVNPDKFNYLFVDLPKMSSCNWSALAATPGNWIL SNASGHGYWMWSHEFGHNLGAKHPGSLVDCPTPGGTVEVGGACRVGKVDDPSDTMGGGGRRLYPASYQLFAGWLGEADVP EINGSGTYRLAPLWGDAPGAKAYRIARADGSTLWLEFRQPLRGFDDWKADDSFVNGVIVRTVAHGGNVLTNTLVDATPGS ANGMKDAPLMPGHALHDTLSGKIVTVKSVGPDGAVVEVKNDGLLMPDAVVTGPQQAAAGTAVVLSGASSAGDALRYSWVV PVGVDAQPNGAELRFVAPTLEQDRDYAFELTVANDKGYTSQATHVVTVKAQEIVAPPRATISGPASVDGGAAVTLSGASS TGKGLKYAWTGPAGVSITQNGATATFTAPKATDERRYAFKLVVTDALGRKADATHDVTVRASAGEGAAAWDPKKTYATPC HEVSHAGKTWLNGWWVLGDVPGTGGEWGAWREKGVANMHAMCKST >Mature_765_residues MRTFRSTGAVRPQRARPILKPIRVVFATTALSAAVVGLFSASAGAAEPASTSLKNLSRGDDQCLAWQPADNAAVFAACDG GAAQDWTFEPRGGFQRIVNTGASAARGTRMCLHSAAGDTGMGRVAVGVCGEGDQTMRDWRADRGLDGQVVFGNRYRINTG RTAEVLAPRDGGAGVAMQNVRGQPSSVWRSAVSIAPSQRPLLGDKSVLLMVTHFNDSKPADSEVVRKAVFGDGDDHSSLR RYLEVASRGKLTLHGQTLGGVNLGDRPATCDSGAIRTAARNAALARGVNPDKFNYLFVDLPKMSSCNWSALAATPGNWIL SNASGHGYWMWSHEFGHNLGAKHPGSLVDCPTPGGTVEVGGACRVGKVDDPSDTMGGGGRRLYPASYQLFAGWLGEADVP EINGSGTYRLAPLWGDAPGAKAYRIARADGSTLWLEFRQPLRGFDDWKADDSFVNGVIVRTVAHGGNVLTNTLVDATPGS ANGMKDAPLMPGHALHDTLSGKIVTVKSVGPDGAVVEVKNDGLLMPDAVVTGPQQAAAGTAVVLSGASSAGDALRYSWVV PVGVDAQPNGAELRFVAPTLEQDRDYAFELTVANDKGYTSQATHVVTVKAQEIVAPPRATISGPASVDGGAAVTLSGASS TGKGLKYAWTGPAGVSITQNGATATFTAPKATDERRYAFKLVVTDALGRKADATHDVTVRASAGEGAAAWDPKKTYATPC HEVSHAGKTWLNGWWVLGDVPGTGGEWGAWREKGVANMHAMCKST
Specific function: Unknown
COG id: COG3979
COG function: function code R; Uncharacterized protein contain chitin-binding domain type 3
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 18 family. Chitinase class II subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002126 - InterPro: IPR003610 - InterPro: IPR011583 - InterPro: IPR013540 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR014756 - InterPro: IPR022409 [H]
Pfam domain/function: PF02839 CBM_5_12; PF08329 ChitinaseA_N; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 79943; Mature: 79943
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: PS50231 RICIN_B_LECTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTFRSTGAVRPQRARPILKPIRVVFATTALSAAVVGLFSASAGAAEPASTSLKNLSRGD CCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC DQCLAWQPADNAAVFAACDGGAAQDWTFEPRGGFQRIVNTGASAARGTRMCLHSAAGDTG CCEEEECCCCCCEEEEEECCCCCCCCEECCCCHHHHHHHCCCCHHCCHHHHHHHCCCCCC MGRVAVGVCGEGDQTMRDWRADRGLDGQVVFGNRYRINTGRTAEVLAPRDGGAGVAMQNV CCEEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEEECCCCEEEEEECCCCCCCEEECCC RGQPSSVWRSAVSIAPSQRPLLGDKSVLLMVTHFNDSKPADSEVVRKAVFGDGDDHSSLR CCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHH RYLEVASRGKLTLHGQTLGGVNLGDRPATCDSGAIRTAARNAALARGVNPDKFNYLFVDL HHHHHHHCCEEEEECCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEC PKMSSCNWSALAATPGNWILSNASGHGYWMWSHEFGHNLGAKHPGSLVDCPTPGGTVEVG CCCCCCCCEEEEECCCCEEEECCCCCEEEEEEHHHCCCCCCCCCCCEEECCCCCCEEEEC GACRVGKVDDPSDTMGGGGRRLYPASYQLFAGWLGEADVPEINGSGTYRLAPLWGDAPGA CEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC KAYRIARADGSTLWLEFRQPLRGFDDWKADDSFVNGVIVRTVAHGGNVLTNTLVDATPGS CEEEEEECCCCEEEEEEHHHHCCCCCCCCCCHHHCCEEEEEEECCCCEEEHHEEECCCCC ANGMKDAPLMPGHALHDTLSGKIVTVKSVGPDGAVVEVKNDGLLMPDAVVTGPQQAAAGT CCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCEEEECCCCEECCCHHCCCCHHHCCCE AVVLSGASSAGDALRYSWVVPVGVDAQPNGAELRFVAPTLEQDRDYAFELTVANDKGYTS EEEEECCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCC QATHVVTVKAQEIVAPPRATISGPASVDGGAAVTLSGASSTGKGLKYAWTGPAGVSITQN CCEEEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCEEECC GATATFTAPKATDERRYAFKLVVTDALGRKADATHDVTVRASAGEGAAAWDPKKTYATPC CCEEEEECCCCCCCCEEEEEEEEEHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCH HEVSHAGKTWLNGWWVLGDVPGTGGEWGAWREKGVANMHAMCKST HHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHCCC >Mature Secondary Structure MRTFRSTGAVRPQRARPILKPIRVVFATTALSAAVVGLFSASAGAAEPASTSLKNLSRGD CCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC DQCLAWQPADNAAVFAACDGGAAQDWTFEPRGGFQRIVNTGASAARGTRMCLHSAAGDTG CCEEEECCCCCCEEEEEECCCCCCCCEECCCCHHHHHHHCCCCHHCCHHHHHHHCCCCCC MGRVAVGVCGEGDQTMRDWRADRGLDGQVVFGNRYRINTGRTAEVLAPRDGGAGVAMQNV CCEEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEEECCCCEEEEEECCCCCCCEEECCC RGQPSSVWRSAVSIAPSQRPLLGDKSVLLMVTHFNDSKPADSEVVRKAVFGDGDDHSSLR CCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHH RYLEVASRGKLTLHGQTLGGVNLGDRPATCDSGAIRTAARNAALARGVNPDKFNYLFVDL HHHHHHHCCEEEEECCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEC PKMSSCNWSALAATPGNWILSNASGHGYWMWSHEFGHNLGAKHPGSLVDCPTPGGTVEVG CCCCCCCCEEEEECCCCEEEECCCCCEEEEEEHHHCCCCCCCCCCCEEECCCCCCEEEEC GACRVGKVDDPSDTMGGGGRRLYPASYQLFAGWLGEADVPEINGSGTYRLAPLWGDAPGA CEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC KAYRIARADGSTLWLEFRQPLRGFDDWKADDSFVNGVIVRTVAHGGNVLTNTLVDATPGS CEEEEEECCCCEEEEEEHHHHCCCCCCCCCCHHHCCEEEEEEECCCCEEEHHEEECCCCC ANGMKDAPLMPGHALHDTLSGKIVTVKSVGPDGAVVEVKNDGLLMPDAVVTGPQQAAAGT CCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCEEEECCCCEECCCHHCCCCHHHCCCE AVVLSGASSAGDALRYSWVVPVGVDAQPNGAELRFVAPTLEQDRDYAFELTVANDKGYTS EEEEECCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCC QATHVVTVKAQEIVAPPRATISGPASVDGGAAVTLSGASSTGKGLKYAWTGPAGVSITQN CCEEEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCEEECC GATATFTAPKATDERRYAFKLVVTDALGRKADATHDVTVRASAGEGAAAWDPKKTYATPC CCEEEEECCCCCCCCEEEEEEEEEHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCH HEVSHAGKTWLNGWWVLGDVPGTGGEWGAWREKGVANMHAMCKST HHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8416892; 1464065; 7764022 [H]