| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is gpmB [H]
Identifier: 115350633
GI number: 115350633
Start: 651155
End: 651817
Strand: Direct
Name: gpmB [H]
Synonym: Bamb_0579
Alternate gene names: 115350633
Gene position: 651155-651817 (Clockwise)
Preceding gene: 115350632
Following gene: 115350643
Centisome position: 18.31
GC content: 66.97
Gene sequence:
>663_bases ATGGCCACCACGCAGATTCTGTTCATTCGCCATGGCGAAACGGCCTGGAACCGCATCAAGCGCATCCAGGGCCATATCGA CATTCCGCTGGCCGAAACGGGGCTCGCGCAGGCGCGGCGGCTGGCCGTCCGGCTCGCGCGGGAAGCGCGCGAAGGGCAGC GGATCGACGCGATCTATTCGAGCGACCTGATGCGCGCGCAGCAGACCGCGCAACCCTTTGCCGATGCGCTCGGGCTGTCG CTGCAGTTGCGCGAAGGGCTGCGGGAACGCGCGTACGGCGTGTTCCAGGGGCATGACAGCACCGAGATCGAGACGCTGTT TCCGGACGCCTACGCCGCGTGGCAGACCCGCGACCCAGGCTTCGCGCCCGACGGCGGCGAGTCGCAGAGGGAGTTCTATC ACCGTGTGCTGCATGCGCTCGAGCCGATCGTCGCGGCGCATCCGGGCGGCCGGATCGCTTGCGTCGCGCACGGCGGCGTA CTCGACTGCGTGTACCGCTTTGCAAACGGTCTCGAGTTGTCGGCACCGCGCAGCTATCAACTGCTCAACACGAGCATCAA CGTCGTCGATTACGTCGATGGCCGCGCGCAGGTCGTGCAATGGGCCGACGTGTCGCATCTGGACGCCGCGAGCGACGACG ACGGGTATCGCAAGGTGCTCTGA
Upstream 100 bases:
>100_bases GCGAGTTCGGCGCCGACATGCAGGTGTCGCTCGTCAACGACGGCCCCGTGACGTTCTGGCTGCAAGTGCGGCCCTGACAC TTTCCCGGAGACGCGCCGCG
Downstream 100 bases:
>100_bases TCAGGTCGTATCGCCCCGGCCTGACCTGGCCTGATGGGCCGGGGGCGCTTCGTACGAGCGTGCGCTAGGGCAAGCGCGTC AGCTTGTCACCCGTATTTCC
Product: phosphoglycerate mutase
Products: NA
Alternate protein names: PGAM; Phosphoglyceromutase [H]
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MATTQILFIRHGETAWNRIKRIQGHIDIPLAETGLAQARRLAVRLAREAREGQRIDAIYSSDLMRAQQTAQPFADALGLS LQLREGLRERAYGVFQGHDSTEIETLFPDAYAAWQTRDPGFAPDGGESQREFYHRVLHALEPIVAAHPGGRIACVAHGGV LDCVYRFANGLELSAPRSYQLLNTSINVVDYVDGRAQVVQWADVSHLDAASDDDGYRKVL
Sequences:
>Translated_220_residues MATTQILFIRHGETAWNRIKRIQGHIDIPLAETGLAQARRLAVRLAREAREGQRIDAIYSSDLMRAQQTAQPFADALGLS LQLREGLRERAYGVFQGHDSTEIETLFPDAYAAWQTRDPGFAPDGGESQREFYHRVLHALEPIVAAHPGGRIACVAHGGV LDCVYRFANGLELSAPRSYQLLNTSINVVDYVDGRAQVVQWADVSHLDAASDDDGYRKVL >Mature_219_residues ATTQILFIRHGETAWNRIKRIQGHIDIPLAETGLAQARRLAVRLAREAREGQRIDAIYSSDLMRAQQTAQPFADALGLSL QLREGLRERAYGVFQGHDSTEIETLFPDAYAAWQTRDPGFAPDGGESQREFYHRVLHALEPIVAAHPGGRIACVAHGGVL DCVYRFANGLELSAPRSYQLLNTSINVVDYVDGRAQVVQWADVSHLDAASDDDGYRKVL
Specific function: Unknown
COG id: COG0406
COG function: function code G; Fructose-2,6-bisphosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. GpmB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790856, Length=222, Percent_Identity=36.036036036036, Blast_Score=97, Evalue=6e-22, Organism=Escherichia coli, GI1786970, Length=112, Percent_Identity=35.7142857142857, Blast_Score=64, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6324857, Length=203, Percent_Identity=30.0492610837438, Blast_Score=73, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR023086 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 24424; Mature: 24292
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATTQILFIRHGETAWNRIKRIQGHIDIPLAETGLAQARRLAVRLAREAREGQRIDAIYS CCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH SDLMRAQQTAQPFADALGLSLQLREGLRERAYGVFQGHDSTEIETLFPDAYAAWQTRDPG HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCEEECCCCCCCCEEECCCHHHHCCCCCCC FAPDGGESQREFYHRVLHALEPIVAAHPGGRIACVAHGGVLDCVYRFANGLELSAPRSYQ CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEE LLNTSINVVDYVDGRAQVVQWADVSHLDAASDDDGYRKVL EECCCCEEEEECCCHHHEEEECCCCCCCCCCCCCCHHCCC >Mature Secondary Structure ATTQILFIRHGETAWNRIKRIQGHIDIPLAETGLAQARRLAVRLAREAREGQRIDAIYS CCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH SDLMRAQQTAQPFADALGLSLQLREGLRERAYGVFQGHDSTEIETLFPDAYAAWQTRDPG HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCEEECCCCCCCCEEECCCHHHHCCCCCCC FAPDGGESQREFYHRVLHALEPIVAAHPGGRIACVAHGGVLDCVYRFANGLELSAPRSYQ CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEE LLNTSINVVDYVDGRAQVVQWADVSHLDAASDDDGYRKVL EECCCCEEEEECCCHHHEEEECCCCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA