Click here to switch to the map view.

The map label for this gene is omlA [H]

Identifier: 115350599

GI number: 115350599

Start: 611148

End: 611945

Strand: Direct

Name: omlA [H]

Synonym: Bamb_0545

Alternate gene names: 115350599

Gene position: 611148-611945 (Clockwise)

Preceding gene: 115350597

Following gene: 115350600

Centisome position: 17.18

GC content: 72.93

Gene sequence:

>798_bases
ATGCGGAGTGCCATCATCGCTGCCGCCGCCGTTGCCGCGCTGGCTGGTTGTTCGTCGTACGACAGCGTGACGCAGCGTAT
CGCGCAGAGCATCACGCCCTATCGGATCACCGTCGTGCAGGGCAACTTCGTGTCGCAGGAGAAGGCCGCGCAGCTGCAGG
CCGGCATGACGCGCGAGCAGGTCCGCGCGCTGCTCGGCACGCCGCTGCTGGCCGACATGTTCCATGCCGACCGCTGGGAT
TACCTCTTTTACTTCAAGCGCGGCTCGACGTCCGTCGTCCAGCAGCGCGATCTCGTGCTGACGTTCGCGAGCGATCGCCT
CGCGAGCTGGACCGGCGCCGACAACCTGCCTTCCGAGCTCGACCTGCTGGCCGATATCGACGGCGACCGCGGCGGCAAGA
AGGCGAAGGCCGCCGCCGAGGCGAAGCGGGCGGCCGAGGCCGCTGCTGCCGCGAGCGCCGCGCAGGCTGCCGAGGCCGCG
AGCCCGTCCACCGGGCTGGCGTCCGGCGCGGTGGTCGACCAGGATGCGAACGCCCAGGCGGCGCGCGCGGCGAACCGCGC
GACCAACCAGGTATCGGGGCAGGGCTCGGCCAGCCGCCGCTTCACGCCGTCCGCGCAGGCTTCGGGCGGCGCGCCGGTGC
CGGGCGGCCAGCCGCCGGGCGCCGCGCCGGCGATCCAGCCGCAGTTCCAGTTCCACCGCCCGCCGCAGCCGAACGTGTCG
AACGAAGCGGCGCCGCCGGTCGGCCCGCAAGGCTCCGACAACCTGCAGAACCAGCCGCTCACCGCGCCGGCGCAGTAA

Upstream 100 bases:

>100_bases
CGGCTTTTCGCCGTTCCAGAAACACGCGCGGCTCGCGACGCGGGCCTGCACGGTGACGGAAATGTTCCCGGAATCTCTTT
CGCACTTTCAGAGGAGTCGC

Downstream 100 bases:

>100_bases
ACGTCCGGCATGCGGAAACAGGGCGGCATGCGCCGCCCGCCTTTAGACCTGTCGTGTAGAAAGCCATGAAGATTGCGATT
GCCGGTGCATCGGGCCGTAT

Product: SmpA/OmlA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRSAIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQAGMTREQVRALLGTPLLADMFHADRWD
YLFYFKRGSTSVVQQRDLVLTFASDRLASWTGADNLPSELDLLADIDGDRGGKKAKAAAEAKRAAEAAAAASAAQAAEAA
SPSTGLASGAVVDQDANAQAARAANRATNQVSGQGSASRRFTPSAQASGGAPVPGGQPPGAAPAIQPQFQFHRPPQPNVS
NEAAPPVGPQGSDNLQNQPLTAPAQ

Sequences:

>Translated_265_residues
MRSAIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQAGMTREQVRALLGTPLLADMFHADRWD
YLFYFKRGSTSVVQQRDLVLTFASDRLASWTGADNLPSELDLLADIDGDRGGKKAKAAAEAKRAAEAAAAASAAQAAEAA
SPSTGLASGAVVDQDANAQAARAANRATNQVSGQGSASRRFTPSAQASGGAPVPGGQPPGAAPAIQPQFQFHRPPQPNVS
NEAAPPVGPQGSDNLQNQPLTAPAQ
>Mature_265_residues
MRSAIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQAGMTREQVRALLGTPLLADMFHADRWD
YLFYFKRGSTSVVQQRDLVLTFASDRLASWTGADNLPSELDLLADIDGDRGGKKAKAAAEAKRAAEAAAAASAAQAAEAA
SPSTGLASGAVVDQDANAQAARAANRATNQVSGQGSASRRFTPSAQASGGAPVPGGQPPGAAPAIQPQFQFHRPPQPNVS
NEAAPPVGPQGSDNLQNQPLTAPAQ

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=120, Percent_Identity=36.6666666666667, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 27246; Mature: 27246

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSAIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQAGMTREQ
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHH
VRALLGTPLLADMFHADRWDYLFYFKRGSTSVVQQRDLVLTFASDRLASWTGADNLPSEL
HHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHCCEEEEECCCHHHCCCCCCCCCHHH
DLLADIDGDRGGKKAKAAAEAKRAAEAAAAASAAQAAEAASPSTGLASGAVVDQDANAQA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHH
ARAANRATNQVSGQGSASRRFTPSAQASGGAPVPGGQPPGAAPAIQPQFQFHRPPQPNVS
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NEAAPPVGPQGSDNLQNQPLTAPAQ
CCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRSAIIAAAAVAALAGCSSYDSVTQRIAQSITPYRITVVQGNFVSQEKAAQLQAGMTREQ
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHH
VRALLGTPLLADMFHADRWDYLFYFKRGSTSVVQQRDLVLTFASDRLASWTGADNLPSEL
HHHHHCCHHHHHHHHCCCCCEEEEEECCCHHHHHHCCEEEEECCCHHHCCCCCCCCCHHH
DLLADIDGDRGGKKAKAAAEAKRAAEAAAAASAAQAAEAASPSTGLASGAVVDQDANAQA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHH
ARAANRATNQVSGQGSASRRFTPSAQASGGAPVPGGQPPGAAPAIQPQFQFHRPPQPNVS
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NEAAPPVGPQGSDNLQNQPLTAPAQ
CCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]