Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115350553

Identifier: 115350553

GI number: 115350553

Start: 564937

End: 565263

Strand: Direct

Name: 115350553

Synonym: Bamb_0499

Alternate gene names: NA

Gene position: 564937-565263 (Clockwise)

Preceding gene: 115350552

Following gene: 115350554

Centisome position: 15.88

GC content: 59.94

Gene sequence:

>327_bases
ATGCAAAGCATGCCCGGTGCCTTAACGGCCCAACGACATGATCGGCACTTTGCGAACCCTTCAGTGGGATGGGCAAACTT
CCCTCCGGAAAAAGCGGACGGCCGTGTGGCGGTCTGCTTTATCAAGCGATTAGGGGTAGCGGCGCGAGGTGCGCCGGCTA
CCGACTTGATTTGGCGCGCGAGGCCATGGGGTCACGCGCGCCATACCGTATTCATTAGCGTAAGCGCGCGGTATCCGCGT
ACGCCGATGAATAGCCCGCTTCGAAGCGCACGTGCTGAACAGCGTCCGCGGGAAGCGGGTTTTGACGAAGGGTGTAGTTT
GAACTGA

Upstream 100 bases:

>100_bases
CGCTGTCCTGGGAATAACCCGCAGCAGCGAACCCGTCACATGATGTGAGCAGCCGGCGGCCTCTCGGCCCCGGCCCAAGG
TTTAGGAGCAAGAACGCCTG

Downstream 100 bases:

>100_bases
CTCTCATCTGAACCTGAAGGAGAACAACATGGCTACTGCCAAGAAAAAACCGGCTGCGAAGAAGGTTGCTGCCAAGAAGA
CCGTTGCGAAGAAGGCTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MQSMPGALTAQRHDRHFANPSVGWANFPPEKADGRVAVCFIKRLGVAARGAPATDLIWRARPWGHARHTVFISVSARYPR
TPMNSPLRSARAEQRPREAGFDEGCSLN

Sequences:

>Translated_108_residues
MQSMPGALTAQRHDRHFANPSVGWANFPPEKADGRVAVCFIKRLGVAARGAPATDLIWRARPWGHARHTVFISVSARYPR
TPMNSPLRSARAEQRPREAGFDEGCSLN
>Mature_108_residues
MQSMPGALTAQRHDRHFANPSVGWANFPPEKADGRVAVCFIKRLGVAARGAPATDLIWRARPWGHARHTVFISVSARYPR
TPMNSPLRSARAEQRPREAGFDEGCSLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11964; Mature: 11964

Theoretical pI: Translated: 11.77; Mature: 11.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSMPGALTAQRHDRHFANPSVGWANFPPEKADGRVAVCFIKRLGVAARGAPATDLIWRA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCCCEEECC
RPWGHARHTVFISVSARYPRTPMNSPLRSARAEQRPREAGFDEGCSLN
CCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQSMPGALTAQRHDRHFANPSVGWANFPPEKADGRVAVCFIKRLGVAARGAPATDLIWRA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCCCEEECC
RPWGHARHTVFISVSARYPRTPMNSPLRSARAEQRPREAGFDEGCSLN
CCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA