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The map label for this gene is ypjD [C]

Identifier: 115350548

GI number: 115350548

Start: 558009

End: 558902

Strand: Direct

Name: ypjD [C]

Synonym: Bamb_0494

Alternate gene names: 115350548

Gene position: 558009-558902 (Clockwise)

Preceding gene: 115350545

Following gene: 115350549

Centisome position: 15.69

GC content: 69.35

Gene sequence:

>894_bases
ATGGATATTGTACTGTATGCCCTCACCGCATTCCTGTACGGCGGCCTCGCCGTCGCAGGCTGGCGCACGCACCGCCAGGG
CGCGACGCCGCTCGTCGCGAGCGTGCCCGCCGTGCCGGTTCCGGCGTCCGCCGCGTCGGGGATGAGCGCGGCCGGCCGCG
CGCTGCTGTTCGCGGCGCTCGTCGCGCACGGCGTGCTGCTGCACATGACGATCTTCCCGCACGACGCGATGATCTTCGGG
TTCGCGTTTGCGTTGTCGGCGATGTTCTGGCTCGGCGCCGGCATCTACTGGATCGAGAGCTTCTTCTTCCCGCTCGACAG
CCTGCGCCTGCTGGTGCTGCCGCTCGCGTGCGGCGCGTCGCTGCTGCCGCTCGTGTTCGGCGGCGTGCGGGTGCTGCCTT
ATGCCGCGGCGCCGCTGTTCAAGATGCACTTCCTGATCGCGAACATCGCGTACGGCCTCTTTGCAATCGCCGCGCTGCAC
GCGGTCCTGATGCTGATGGTCGAGCGGCGCCTGCAGTCGCTCAGGAGCGGCGGGCGCGACGGCTCGACCGGCTGGATCGC
GAGCTGGCTCGAAACGCTGCCGCCGCTGCTCACGCTCGAGAAGCTGCTGTTCCGCCTGATCGGCGCCGGCTTCGTGCTGC
TGACGCTGACGCTCGCATCGGGGATCCTGTTCAGCGAGCAGGTCGATGCGCGCGCGATGCGGCTCGATCACAAGACCGTG
TTCGCGGTGCTGTCGTGGCTGATGTTCGGCGGCCTGCTGGTCGCCCGCAAGACGTCGGGCTGGCGCGGGCGCGGCGCCGC
GCGCTGGGTGCTCGTGTCGTTTGCGGCGCTGCTGCTCGCGTATGTCGGCAGCCGGTTCGTTTTCGAGGTGCTGCTGCACC
GCTCCGTGGTTTGA

Upstream 100 bases:

>100_bases
TTGTCGAGCATGGGGAGCGTTGGACAGTGGGGCCCGAAGGCGCAACGGAACCGAACAAAGGGAGCCGTCGCGGGAAGGGG
GCCTAGTGTAAACTTCGAAC

Downstream 100 bases:

>100_bases
ACGCAGGTTTCCGATGCGACAGATTCTTCTCCTGATTCTTCTTCTCTTCGCGGGCTCGTGGCTTGCGCGCAAGCTGCGCC
AGGCCCAGGAGCAAGCGCAC

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDIVLYALTAFLYGGLAVAGWRTHRQGATPLVASVPAVPVPASAASGMSAAGRALLFAALVAHGVLLHMTIFPHDAMIFG
FAFALSAMFWLGAGIYWIESFFFPLDSLRLLVLPLACGASLLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFAIAALH
AVLMLMVERRLQSLRSGGRDGSTGWIASWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARAMRLDHKTV
FAVLSWLMFGGLLVARKTSGWRGRGAARWVLVSFAALLLAYVGSRFVFEVLLHRSVV

Sequences:

>Translated_297_residues
MDIVLYALTAFLYGGLAVAGWRTHRQGATPLVASVPAVPVPASAASGMSAAGRALLFAALVAHGVLLHMTIFPHDAMIFG
FAFALSAMFWLGAGIYWIESFFFPLDSLRLLVLPLACGASLLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFAIAALH
AVLMLMVERRLQSLRSGGRDGSTGWIASWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARAMRLDHKTV
FAVLSWLMFGGLLVARKTSGWRGRGAARWVLVSFAALLLAYVGSRFVFEVLLHRSVV
>Mature_297_residues
MDIVLYALTAFLYGGLAVAGWRTHRQGATPLVASVPAVPVPASAASGMSAAGRALLFAALVAHGVLLHMTIFPHDAMIFG
FAFALSAMFWLGAGIYWIESFFFPLDSLRLLVLPLACGASLLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFAIAALH
AVLMLMVERRLQSLRSGGRDGSTGWIASWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARAMRLDHKTV
FAVLSWLMFGGLLVARKTSGWRGRGAARWVLVSFAALLLAYVGSRFVFEVLLHRSVV

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 32058; Mature: 32058

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVLYALTAFLYGGLAVAGWRTHRQGATPLVASVPAVPVPASAASGMSAAGRALLFAAL
CHHHHHHHHHHHHCCHHHHCCHHCCCCCCCHHHCCCCCCCCCCHHCCCHHHHHHHHHHHH
VAHGVLLHMTIFPHDAMIFGFAFALSAMFWLGAGIYWIESFFFPLDSLRLLVLPLACGAS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHH
LLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFAIAALHAVLMLMVERRLQSLRSGGRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GSTGWIASWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARAMRLDHKTV
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAVLSWLMFGGLLVARKTSGWRGRGAARWVLVSFAALLLAYVGSRFVFEVLLHRSVV
HHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDIVLYALTAFLYGGLAVAGWRTHRQGATPLVASVPAVPVPASAASGMSAAGRALLFAAL
CHHHHHHHHHHHHCCHHHHCCHHCCCCCCCHHHCCCCCCCCCCHHCCCHHHHHHHHHHHH
VAHGVLLHMTIFPHDAMIFGFAFALSAMFWLGAGIYWIESFFFPLDSLRLLVLPLACGAS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHH
LLPLVFGGVRVLPYAAAPLFKMHFLIANIAYGLFAIAALHAVLMLMVERRLQSLRSGGRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GSTGWIASWLETLPPLLTLEKLLFRLIGAGFVLLTLTLASGILFSEQVDARAMRLDHKTV
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAVLSWLMFGGLLVARKTSGWRGRGAARWVLVSFAALLLAYVGSRFVFEVLLHRSVV
HHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]